LOC113543961


Basic Information

Item Value
gene id LOC113543961
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21468412 ~ 21473118 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942513.2
ACCATGATGATCCTCCGGTCTGTTCTCCTACTGGTACTTGGCATCAATGTTGGCAAGtgcaatttactttttttttaaactttgaacAGCAATGACTTAGTGCTTTTGCAGAActtacttttcctttttttaaattgatgatCCTAAATCTCATTAAAGGTTGTtaggaaaaaggaaaatttttgattgtgtgaaaatgtttgttGCAGAGGGGCCATGGTCGAGCATCAGCTTCAGCTGTCGAACCGGCAGGTAATGTGTTATGATTCTCACCGATGTCTTATTACCGCTAACCTACTTATGTGTCTTTGTACATTCAGCGACTGCCAAAacgtgaaagagagagaagcagggAGGGGGCATAGCTGGTggagacagcacacacacacacggtccgTGACGGACCCTTTTCTGTTGGCTTGTcctttttgttgagtttttcaAAGTGCCGTGTCACGCTCCACCAGTTATGTCTTTCTCTCATTACGGCAGTTGCCAAAAGTGCAGAGGCACAAATAAGTAGGCTGGCGGTAATAagcacaggtgagaatcatcatgtgTTACCTGCCGGTGGACCCACCTCCTCTCAGTCCGCAGGTGATGCTCGACCACGCCTCCGCTGCCGCATTGTTGTTTCTAGGGTCTGATCCAAATTTTGCTGGTTGAGAATTTCCAAATTTTAGGCAACCAAAGGCTCAAAAAAACTtcttaaaaatagaaatgaggAATTATTTCTTCATGCTACAGAGATAAAACATCCAAAAAGAGGGTTAAATTTTAGCAGATGTGAAGTTGATACCTGAGAATTTTCACCTTGACCAAAGTCTGGGCAGTGAACACCTTGTGGTAGAAACATGAGATCTAGGTCTGGAATCAAGTGACCAGAAGAGAATACCATGAAACATGAAACTTGGGTTTGAATTGACTTGAGgattaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagattcagCTCAGGCACTTTACTCCAGGGCACTGTGGCACTTCAGAGGTATGATCATCTGTGCCATACCTACTAGCTGGCCATTCCTAGACTATGGGAACTATGGCTGCTACTGTGGCTGGGGCGGCTCAGGCACCCCCGTTGATGACTTGGACAGATGCTGTCAGGTTCATGACAACTGTTATGGTGAAGCCTTGAAGCATGAAGCGTGCTGGGCCATCATAGAAAACCCTTACACAGTGTTCTACGGCTATGATTGTGACAAAGCCACTAAGAAAATCACCTGCAAGAGCAGTAACAACGAGTGCAAGATGTTCATCTGTGAGTGTGACCGGAAGGCTGCTGAGTGCTTTGCTGTATCTAAATACAATAAAGAGCATAAGAACCTGCCCCAGGCTCGCTGCCAAACATGACAGTCATGAACATGATAAAGGAGAAGCTCTGAAACAATTTGAAGCACATGCTCTTTGCATCATCACTTAGAAACAGTTTGCACTAAACACTCCACATCAGCATTACCTTTGCTTCAGGCACCTGCAACTTGGATGACGTGTtcttgaatatataatatttatatacgcttttttttttttttttaacgttatATATGTAATTACTTCTAATActattgtttttaaaactgcatttgtGTCTTCTTTGGGACAACTGACTCATTCGTCAGCCACAGAAGAATGTATTTGTCATCAAAACCATTTACAAAGTTCTATCCTATTTTAATAACATGACACCAATGCTTTGAAAAGTAATGTCAGCTTGGCAGTGTGATTTGTGTAATAATCCTTGACTGTACATGGAATGGATAATTAGACTATTGggtttgtttactgctgatgacAGAATCACACTTTTTGGAAATAGCATGTGGAAAATGATTATTGATATAGAAGGCTAATATTTTTCTATGATGATTGTCACAGTTTTGGTCATTACACAGTGTTCCTgcacaatttattaattaatattgtattaattgtatttGCAATTAATtctattgtcatttttaaagacaGGTAGAGAGAACCTGACACTCTGGTACACACTGCCAACAATTTTTTCTTGACgaataaagaatttttttcttttttttcttttaatttacatttggtCATAAAT

Function

GO: NA

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942513.2 True 2120 mRNA 0.40 3 21468412 21473118

Neighbor

gene id symbol gene type direction distance location
LOC113523962 pla2g1b coding upstream 2269 21462543 ~ 21466143 (+)
LOC113544185 pla2g1b coding upstream 16339 21447235 ~ 21452073 (+)
prkab1a prkab1 coding upstream 23148 21435902 ~ 21445264 (+)
phf24 phf24 coding upstream 43565 21393821 ~ 21424847 (+)
pigo pigo coding upstream 118589 21337235 ~ 21349823 (+)
ppp2r2ab ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801 coding downstream 798948 22272066 ~ 22289033 (+)
bnip3lb bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042 coding downstream 817963 22291081 ~ 22310553 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding downstream 842176 22315294 ~ 22351716 (+)
igsf9a LOC108277156 coding downstream 906802 22379920 ~ 22426821 (+)
vsig8a LOC108277295 coding downstream 1233843 22706961 ~ 22766275 (+)
G272803 NA non-coding upstream 477861 20990343 ~ 20990551 (+)
G272770 NA non-coding upstream 536829 20927622 ~ 20931583 (+)
G272470 NA non-coding upstream 718765 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 730912 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 743218 20659603 ~ 20725194 (+)
G272940 NA non-coding downstream 6782 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 14994 21488112 ~ 21492076 (+)
G273248 NA non-coding downstream 489546 21962664 ~ 21962867 (+)
G273258 NA non-coding downstream 508861 21981979 ~ 21982191 (+)
G273226 NA non-coding downstream 564721 22037839 ~ 22038149 (+)
LOC113544125 LOC100304632 other upstream 106668 21359519 ~ 21361744 (+)
G272408 NA other upstream 925458 20540325 ~ 20542954 (+)
G272374 NA other upstream 1039269 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 1069465 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 1524907 19853554 ~ 19943505 (+)
LOC113543995 NA other downstream 2969 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 449433 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 896138 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1149310 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 1576694 23049812 ~ 23145567 (+)

Expression


Co-expression Network