lrrtm4l1 (lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720)


Basic Information

Item Value
gene id lrrtm4l1
gene name lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22622428 ~ 22665570 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942744.2
CCGCCGCGTTACTTTGGCGCGCGCACTATGCTGCTCGGCGCTCCGGCGCTCACGTGGCTTCTTTCCGGTGCATTTGGACCCAACCGGGGGAGGCGCGCGGCCGCCCGGTCAGTGCGTGTGCGCGCTTTTTGGGCACCTTaaggacagattttttttaattgatatctttttttgcaagcatgtttttttccatgaaGGACCGACTTGAGCCTTGAGACTTACGACTTAAGACTTGAGgcgcgtgtgcgcgcgtgcCTCCGTCTTCATCAGGTCTGCAGCGCGAGGAGACCGTCGGAGAATCTCCCGAGAAACCGGAGGGACGCAAAGTGCACGAGACTGGAGGCGACACGCAGCAGATATGGgtcTGTCGATTTGTGCCAAGAGATTAGCatgcctcctctctctccttgccacctttctccttcttctctgcTCCGGGGAGAAAACATGCCCCTACAGCTGCCGCTGTGAGGGTAAAATCGTCCATTGTGACTCAGCATCTTTCATTGATGTCCCAGAGAACATTTCAGTAACTTGCCAGGGTTTGTCTCTGCGAAACAATGACTTGCACACAATGCTCCCTTACCAGTTTGCCCATCTGAACCAGCTTCTCTGGCTGTATCTGGACCACAATCAGATCTCATATGTAGACAGCCGTGCTTTCCAGGGCATACGACGTCTAAAGGAGTTGGTCTTAAGCACCAACAGGATCTCACAACTACACAATGCTACGTTCCATGGTGTGCCAAATCTCCGCAGCCTGGACCTATCCTATAACAAACTCCAGGAATTGCAGCCAGGTCAGTTCCATGGTCTTCGAAAGCTACAAAATCTGCATCTACGCTCCAACGGGCTCACAACAATTCCTGTTCGGGCTTTTATAGAGTGCAGAAGCTTGGAGTTTCTGGATCTGGGGTACAATCGACTTCGCGTCCTCACGCGTACCACATTCTTGGGTTTATCTCGGCTGATGGAACTGCACCTGGAGCACAATCAGTTCTCTCGGAtcaacttctttctttttccacgCCTTGCAAACCTCCGTGGGTTGTATCTCCAGTGGAATCGTATCCGAGCAGTTAACCAAGGACTCCCCTGGATGTGGTATACCCTACAGAAGCTGGACCTGTCTGGCAATGAGATCCAGAGTCTGGATCCTGTGGTTTTCCAATGCTTGCCAAATCTTCAGGTTCTTAACTTGGAGTCTAACAAGCTTGCTAATGTGTCCCATGAGACGGTGGCAGCCTGGATTTCCCTCTCAACAATCAGCCTCGCTGGGAATGTCTGGGATTGTGGGCCGGGCATTTGTCCTCTTGTTGCCTGGTTAAAGAATTTTCGTGGAACTAAGGACACAAGTATCATTTGCAGCAGTCCTAAACATCTTCAGGGGGAAAAGGTTATGGAGGCAACAAAAAATTATATAGATTGTGAAGATTTTGAACTCATCCCCCAAACACCGTTTCCTCACCACACTTGGGAGTCAAGTATGGAAACTACCCCGGAGCCAATCTTGCCTTTGACAACTCCCGAACAACCCCTGCCTCCAGCCACCTCTGAACCACCCATCCCACCATTGTTAGCTCAACCTCTTCCTTATCCTACTATGCCTGAAACTAACCCCAGAGACACCCCTCCGAATACGCCACCACCATCCAACAGCCTACTAGTGACTCCATCTCCAGAACAAGAGGACTTATCCTTCCATAAGATTGTCGTTGGTGGTGTGGCACTTTTCTTTACAACATCACTCATCTTGACAGTGATATATGTCTCCTGTAAACGGTATCCTGGAGCCACAAGGCTGTTGCAACAGCGCTCCGTGGTTGGACGGAAGAGACGGAAAAAGAGTCCCGAGCCAGAACAGAACCTGAGCTCCCAACTGCAGGAATATTACATGAGCTACAACCCTGCTGCTACGCCGGAAGCCATGGATGTACTGGCCAATGGGACTGGTACTTGCACATGTACCATATCCGGCTCCAGGGAATGTGAGaATGAATATGTGTGTCCCAGACCACTGCCTCGAGCCTGGATCGGAGACATTCCCACAATTCACTAGCTGGACTTCTATCTCCACTTGATCATCTGCAACAGGGTTCCTGTAAAGAATTTCCATCACTTCACATCCCACTTCGGCCATTTCCTTCCGTTTGGATTGTAGGAGTGTACCAGAGGAGCGAGCAAGTTGTCCTTTCCCAGAATCCCTTGCTGTGAAAGCATTTTGTATTATAATTCTCGAGACAGATTTTTGCGCGAAAAAACAGTTTCTTTTAATCGCCTGCCATTTTTTAGGAGCTTCTCCACTGCAGCCTTGTGACATGGACTTGTGAAGGACAGCGTGGACGTGGACGTGGACGTGGACGTGCACGGCTTCAGTGGTgccttttgtgcattttgttctCGTCCATTTTTTTATCCGGCAGGAATAAACGATTCGGAATCAAATGCTAAACTAATGAGCAGTGAGCGAGTCAGGAACGAGGAGATCATCTCCTGGATTTTCATCCAtaatcttcttcatcatcatcagaataAAAAGAAGGGATTTTATTCACGTTTTTCCAGTCGGACTTATTCCATGCTATTTAACAGTCTTGTGTATGAGAACGATGACGACTTTGTGATGACCCTCGGATGACCCTCGGTTGGTTGAACACGTAGTCTTGTTTACAACCTCAGCATGAACACGGAGGGTCTCAAACACTTTCACACTGACTGCAAAgcaacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgagtgtgtgtacatacttACTTATGGGACAAAGACGTGTGCATGACATTCGGGTGTCAACGTGGTTATAGGGACTTTATTGTTGGTTTCTTGGCTTCTTTACACTGTATAATGTTTCACCCTGCGTTCACACGAGCAAGCGACAAAGTGACATCATTTcctttaaatttattataaaatcaaTTAGTTAACTTGAGAGTTTATTAAATGAATGCAACTTAAATTGCAAATGTAAATGGCTCTGTAAATACCCCAGGCCTGAGTTTAGGTTTtcagcaagtttttttttttttttttttttctt
>XR_003404475.2
TCCGCCGCGTTACTTTGGCGCGCGCACTATGCTGCTCGGCGCTCCGGCGCTCACGTGGCTTCTTTCCGGTGCATTTGGACCCAACCGGGGGAGGCGCGCGGCCGCCCGGTCAGTGCGTGTGCGCGCTTTTTGGGCACCTTaaggacagattttttttaattgatatctttttttgcaagcatgtttttttccatgaaGGACCGACTTGAGCCTTGAGACTTACGACTTAAGACTTGAGgcgcgtgtgcgcgcgtgcCTCCGTCTTCATCAGGTCTGCAGCGCGAGGAGACCGTCGGAGAATCTCCCGAGAAACCGGAGGGACGCAAAGTGCACGAGACTGGAGGCGACACGCAGCAGATATGGgtcTGTCGATTTGTGCCAAGAGATTAGCatgcctcctctctctccttgccacctttctccttcttctctgcTCCGGGGAGAAAACATGCCCCTACAGCTGCCGCTGTGAGGGTAAAATCGTCCATTGTGACTCAGCATCTTTCATTGATGTCCCAGAGAACATTTCAGTAACTTGCCAGGGTTTGTCTCTGCGAAACAATGACTTGCACACAATGCTCCCTTACCAGTTTGCCCATCTGAACCAGCTTCTCTGGCTGTATCTGGACCACAATCAGATCTCATATGTAGACAGCCGTGCTTTCCAGGGCATACGACGTCTAAAGGAGTTGGTCTTAAGCACCAACAGGATCTCACAACTACACAATGCTACGTTCCATGGTGTGCCAAATCTCCGCAGCCTGGACCTATCCTATAACAAACTCCAGGAATTGCAGCCAGGTCAGTTCCATGGTCTTCGAAAGCTACAAAATCTGCATCTACGCTCCAACGGGCTCACAACAATTCCTGTTCGGGCTTTTATAGAGTGCAGAAGCTTGGAGTTTCTGGATCTGGGGTACAATCGACTTCGCGTCCTCACGCGTACCACATTCTTGGGTTTATCTCGGCTGATGGAACTGCACCTGGAGCACAATCAGTTCTCTCGGAtcaacttctttctttttccacgCCTTGCAAACCTCCGTGGGTTGTATCTCCAGTGGAATCGTATCCGAGCAGTTAACCAAGGACTCCCCTGGATGTGGTATACCCTACAGAAGCTGGACCTGTCTGGCAATGAGATCCAGAGTCTGGATCCTGTGGTTTTCCAATGCTTGCCAAATCTTCAGGTTCTTAACTTGGAGTCTAACAAGCTTGCTAATGTGTCCCATGAGACGGTGGCAGCCTGGATTTCCCTCTCAACAATCAGCCTCGCTGGGAATGTCTGGGATTGTGGGCCGGGCATTTGTCCTCTTGTTGCCTGGTTAAAGAATTTTCGTGGAACTAAGGACACAAGTATCATTTGCAGCAGTCCTAAACATCTTCAGGGGGAAAAGGTTATGGAGGCAACAAAAAATTATATAGATTGTGAAGATTTTGAACTCATCCCCCAAACACCGTTTCCTCACCACACTTGGGAGTCAAGTATGGAAACTACCCCGGAGCCAATCTTGCCTTTGACAACTCCCGAACAACCCCTGCCTCCAGCCACCTCTGAACCACCCATCCCACCATTGTTAGCTCAACCTCTTCCTTATCCTACTATGCCTGAAACTAACCCCAGAGACACCCCTCCGAATACGCCACCACCATCCAACAGCCTACTAGTGACTCCATCTCCAGAACAAGAGGACTTATCCTTCCATAAGATTGTCGTTGGTGGTGTGGCACTTTTCTTTACAACATCACTCATCTTGACAGTGATATATGTCTCCTGTAAACGGTATCCTGGAGCCACAAGGCTGTTGCAACAGCGCTCCGTGGTTGGACGGAAGAGACGGAAAAAGAGTCCCGAGCCAGAACAGAACCTGAGCTCCCAACTGCAGGAATATTACATGAGCTACAACCCTGCTGCTACGCCGGAAGCCATGGATGTACTGGCCAATGGGACTGGTACTTGCACATGTACCATATCCGGCTCCAGGGAATGTGAGGTATGACAATGTCAAGGGCAGcctaaaatcaaaacaaatcaaagcAAATGAAACGGCTCTGGACAACAGAGaATGAATATGTGTGTCCCAGACCACTGCCTCGAGCCTGGATCGGAGACATTCCCACAATTCACTAGCTGGACTTCTATCTCCACTTGATCATCTGCAACAGGGTTCCTGTAAAGAATTTCCATCACTTCACATCCCACTTCGGCCATTTCCTTCCGTTTGGATTGTAGGAGTGTACCAGAGGAGCGAGCAAGTTGTCCTTTCCCAGAATCCCTTGCTGTGAAAGCATTTTGTATTATAATTCTCGAGACAGATTTTTGCGCGAAAAAACAGTTTCTTTTAATCGCCTGCCATTTTTTAGGAGCTTCTCCACTGCAGCCTTGTGACATGGACTTGTGAAGGACAGCGTGGACGTGGACGTGGACGTGGACGTGCACGGCTTCAGTGGTgccttttgtgcattttgttctCGTCCATTTTTTTATCCGGCAGGAATAAACGATTCGGAATCAAATGCTAAACTAATGAGCAGTGAGCGAGTCAGGAACGAGGAGATCATCTCCTGGATTTTCATCCAtaatcttcttcatcatcatcagaataAAAAGAAGGGATTTTATTCACGTTTTTCCAGTCGGACTTATTCCATGCTATTTAACAGTCTTGTGTATGAGAACGATGACGACTTTGTGATGACCCTCGGATGACCCTCGGTTGGTTGAACACGTAGTCTTGTTTACAACCTCAGCATGAACACGGAGGGTCTCAAACACTTTCACACTGACTGCAAAgcaacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgagtgtgtgtacatacttACTTATGGGACAAAGACGTGTGCATGACATTCGGGTGTCAACGTGGTTATAGGGACTTTATTGTTGGTTTCTTGGCTTCTTTACACTGTATAATGTTTCACCCTGCGTTCACACGAGCAAGCGACAAAGTGACATCATTTcctttaaatttattataaaatcaaTTAGTTAACTTGAGAGTTTATTAAATGAATGCAACTTAAATTGCAAATGTAAATGGCTCTGTAAATACCCCAGGCCTGAGTTTAGGTTTtcagcaagtttttttttttttttttttttctt

Function

symbol description
lrrtm4l1 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain; central nervous system; and retina. Orthologous to human LRRTM4 (leucine rich repeat transmembrane neuronal 4).

NR:

description
leucine-rich repeat transmembrane neuronal protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942744.2 False 3070 mRNA 0.48 3 22622429 22665570
XR_003404475.2 True 3142 misc_RNA 0.48 3 22622428 22665570

Neighbor

gene id symbol gene type direction distance location
igsf9a LOC108277156 coding upstream 195607 22379920 ~ 22426821 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding upstream 270712 22315294 ~ 22351716 (+)
bnip3lb bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042 coding upstream 311875 22291081 ~ 22310553 (+)
ppp2r2ab ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801 coding upstream 333395 22272066 ~ 22289033 (+)
LOC113543961 NA coding upstream 1149310 21468412 ~ 21473118 (+)
vsig8a LOC108277295 coding downstream 41391 22706961 ~ 22766275 (+)
atp6v1b2 atp6v1b2,LOC108277294,LOC103034689,LOC108433525,LOC107687718,LOC107678016 coding downstream 101656 22767226 ~ 22780287 (+)
itga2.2 itga2 coding downstream 127008 22792578 ~ 22837618 (+)
fstb LOC108276855,LOC108433530 coding downstream 186911 22852481 ~ 22863830 (+)
snx18b LOC108276851 coding downstream 283323 22948893 ~ 22957601 (+)
G273473 NA non-coding upstream 60103 22562104 ~ 22562325 (+)
G273226 NA non-coding upstream 584279 22037839 ~ 22038149 (+)
G273258 NA non-coding upstream 640237 21981979 ~ 21982191 (+)
G273248 NA non-coding upstream 659561 21962664 ~ 21962867 (+)
G272940 NA non-coding upstream 1129756 21479900 ~ 21492672 (+)
G273600 NA non-coding downstream 135511 22801081 ~ 22840120 (+)
LOC117599377 NA non-coding downstream 326972 22992542 ~ 22994797 (+)
G273683 NA non-coding downstream 371839 23037409 ~ 23038616 (+)
G273644 NA non-coding downstream 382351 23047921 ~ 23062345 (+)
LOC117599346 NA non-coding downstream 403367 23068937 ~ 23073938 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 247553 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 588431 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 1143548 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 1260684 21359519 ~ 21361744 (+)
G272408 NA other upstream 2079474 20540325 ~ 20542954 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 384242 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 578990 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 615991 23281561 ~ 23386107 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 1272408 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 1437503 24103073 ~ 24112853 (+)

Expression


Co-expression Network