ska1 (ska1)


Basic Information

Item Value
gene id ska1
gene name ska1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20864565 ~ 20870543 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942787.2
TTCGTCGTTTTAATAATAACGACGATATTTCGTTGTTTTTCCAAGATAGTGAAATATTCTCTGTAACCTTTAGTGTTAGTTCTCACAACATAGAGCTCGCGTATGGTTAGTGTTAGCTTTAAAGTTCTTCTCCTGTCAgtaaataaacattcattttcttCACTTCTGTCAAGAAGAACAGTTAGTGAATACACTGATGTACAGCAGAAAAATGAGTCATTGTGAGCTGGAAGAGGTGACAAAACACATCAATGACAAGATTTCACTCGTCAAGAGGCTCTTAGAGCTGCGAGCAGTAGCAAAAGATCCAGATAAGCGGGCATATCTGCTCAAAATCGAGCAGGATGTCAATGCCATAAACGGGCTTCTCGACCGGTTTGAGAGATACGTCACTCAGCAGAGGGACCTGCTAAAGCATCTGCAGGACCTGGACATGTTCTTCCAGGAGGATGAGCAGAATGCGCGGCATCTATTAGAGAACATCCCACCACACATGCCTCGCAAAGGAGGGCAGCCGACAGCCCAaggaggacagACGGCGGCTCCCGGCAAGCAGGCAGAAGTGAATTCAGCCCCCCAGGAGCAAGAACAGCCCAGGAAGCCCCCACGGAGCCAGATTAAAGAGATGGAGTTCATCACAGTGCAGGAGTTCGACGGCATCCCACAGTACATGAAGGGACGCGTGACGTATGACCAGCTAAACTCTGCTGTAAAAAGCATCAACACGGCCGTCACTGGGAAATATAAAATCCTTCAGCAGCCTGTCAAGAGCCTGAGTAACGCAGCTCGTAAGCTCCATCAGCGCTTTAAAGACCAGGAGACCAAGGACACTAAAGGTCAGTTCTTTGTGGTGGAGGAGGACCTGCGTGAACTGGCTCAGCTGAAGGTGGATAAGCGTTTTGTGGGTATGTTGAACATGCTGAGACACTGCCAGAGATTAAAGGAGCTGCGAGGAGGTGGTCTGACACGCTACATGCTGCTGTGATCCTCACGTCAGGAAACCAGTGAATGTCCATGcttcagatttatattaataagaGAGGCATGCATTGGTTTAGGATCTACACGTGCAGAAAGAACTGCTGCTCAAACACATGCTGGTGTCTGTGAGTTCTCCTAAAGCTCTCCAAAGACAATCATGTTCCACCTGTAATAGCATTGTGGGCTTCTTCTGAACATCCTCCCAAAGACCTTCACATCACAACTGCTGTCAaagtgcatcattttttcatgttttttttcacattttaatgtacatttataattctgtaaataaatttattaacacaA
>XM_026942788.2
ATCACACGCTATTTCCACTGTGACTTGTTTGAACGTTGGCGCGAGCTGAGTAAACAGACCCAAGTATAGGAATCGGATTAGATAATAAAAGATTATTTATCATAAATAACAGGTTTTGTGTCCAGGAGCAGTCGTAATAAACAAAAATGAGTCATTGTGAGCTGGAAGAGGTGACAAAACACATCAATGACAAGATTTCACTCGTCAAGAGGCTCTTAGAGCTGCGAGCAGTAGCAAAAGATCCAGATAAGCGGGCATATCTGCTCAAAATCGAGCAGGATGTCAATGCCATAAACGGGCTTCTCGACCGGTTTGAGAGATACGTCACTCAGCAGAGGGACCTGCTAAAGCATCTGCAGGACCTGGACATGTTCTTCCAGGAGGATGAGCAGAATGCGCGGCATCTATTAGAGAACATCCCACCACACATGCCTCGCAAAGGAGGGCAGCCGACAGCCCAaggaggacagACGGCGGCTCCCGGCAAGCAGGCAGAAGTGAATTCAGCCCCCCAGGAGCAAGAACAGCCCAGGAAGCCCCCACGGAGCCAGATTAAAGAGATGGAGTTCATCACAGTGCAGGAGTTCGACGGCATCCCACAGTACATGAAGGGACGCGTGACGTATGACCAGCTAAACTCTGCTGTAAAAAGCATCAACACGGCCGTCACTGGGAAATATAAAATCCTTCAGCAGCCTGTCAAGAGCCTGAGTAACGCAGCTCGTAAGCTCCATCAGCGCTTTAAAGACCAGGAGACCAAGGACACTAAAGGTCAGTTCTTTGTGGTGGAGGAGGACCTGCGTGAACTGGCTCAGCTGAAGGTGGATAAGCGTTTTGTGGGTATGTTGAACATGCTGAGACACTGCCAGAGATTAAAGGAGCTGCGAGGAGGTGGTCTGACACGCTACATGCTGCTGTGATCCTCACGTCAGGAAACCAGTGAATGTCCATGcttcagatttatattaataagaGAGGCATGCATTGGTTTAGGATCTACACGTGCAGAAAGAACTGCTGCTCAAACACATGCTGGTGTCTGTGAGTTCTCCTAAAGCTCTCCAAAGACAATCATGTTCCACCTGTAATAGCATTGTGGGCTTCTTCTGAACATCCTCCCAAAGACCTTCACATCACAACTGCTGTCAaagtgcatcattttttcatgttttttttcacattttaatgtacatttataattctgtaaataaatttattaacacaA

Function

symbol description
ska1 Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including chromosome segregation; mitotic cell cycle; and regulation of microtubule polymerization or depolymerization. Predicted to be located in cytoplasm; kinetochore; and microtubule. Predicted to be part of outer kinetochore. Predicted to be active in mitotic spindle and spindle microtubule. Is expressed in optic tectum and retina. Orthologous to human SKA1 (spindle and kinetochore associated complex subunit 1).

NR:

description
spindle and kinetochore-associated protein 1

GO:

id name namespace
GO:0007059 chromosome segregation biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0000940 condensed chromosome outer kinetochore cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942787.2 True 1290 mRNA 0.46 7 20864717 20870543
XM_026942788.2 False 1225 mRNA 0.47 7 20864565 20870543

Neighbor

gene id symbol gene type direction distance location
smarcad1b LOC108277297 coding upstream 315 20844325 ~ 20864250 (+)
stard7 stard7,LOC107713384,LOC107687872 coding upstream 102897 20750173 ~ 20761668 (+)
pcyox1 pcyox1 coding upstream 153539 20702515 ~ 20711026 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding upstream 166902 20684972 ~ 20697663 (+)
snx24 snx24 coding upstream 194078 20663103 ~ 20670487 (+)
slc2a11l LOC108277148 coding downstream 834 20871377 ~ 20880169 (+)
nt5c2l1 nt5dc4,LOC108435390 coding downstream 13484 20884027 ~ 20901267 (+)
gnaz gnaz,LOC107555529 coding downstream 89519 20960062 ~ 21049972 (+)
rab36 rab36,LOC108427235,LOC107555516,LOC103042607 coding downstream 192142 21062685 ~ 21074114 (+)
depdc5 depdc5,LOC107686465,LOC107713378 coding downstream 204110 21074653 ~ 21106826 (+)
G272470 NA non-coding upstream 114918 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 127065 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 139371 20659603 ~ 20725194 (+)
G272427 NA non-coding upstream 204271 20565033 ~ 20660294 (+)
G272426 NA non-coding upstream 300501 20562176 ~ 20564064 (+)
G272770 NA non-coding downstream 57079 20927622 ~ 20931583 (+)
G272803 NA non-coding downstream 119800 20990343 ~ 20990551 (+)
G272940 NA non-coding downstream 609357 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 617569 21488112 ~ 21492076 (+)
G273248 NA non-coding downstream 1092121 21962664 ~ 21962867 (+)
G272408 NA other upstream 321611 20540325 ~ 20542954 (+)
G272374 NA other upstream 435422 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 465618 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 921060 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 1015739 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 488976 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 605544 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1052008 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1498713 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1751885 22622428 ~ 22665570 (+)

Expression


Co-expression Network