LOC113544190


Basic Information

Item Value
gene id LOC113544190
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21488112 ~ 21492076 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404485.2
CTTTTGTGTTTTAGCCTCATCTAGTTTCATTAGTCCCCCTCTAGATGATGGAGAACTGAGCTTGGACTACAGGCAACACTTCCTTGGGCACGCAAAGGGCCATTCCCTTCTACAGGCATTTGGTCATCGGGTACAAGCACAACTTCTAAGGATTTGCCACAGGAATCATCAGTCAGGGCTTCAGAGCATAATCTCAGTCTCCTGCAGTGACGTACAATGTACATTAATCATTCGTTGCATAGTGCAACAAGGTAATCACCAGAATTTATATACTCACCAATAAGCCAGCCATCGCTAATAACAGCTTGCTGAAGTTGAAGTCTCACTGTTCTGTGCTGTACAATGAAAAATAGTGTGTTCCACCTGGCCACTTAATGATGACATTCAGAAAGCTCAACTGCATGTCACAAATTACCTGTACATTAACTGAGTGATAGCCTTTTCATTTCACATACATGAGTTCCTCAAAACTGGGTGATTTTATGGCTGTGTGTGAGCAATCTATTGCTGCAATAACATTTGAAAAACCTGCAATGGCATTAAATTCCTTCATAATTGTTGTCTTTTCTGCTGTCATATTTGGAAATGCAATGTACTGCAGCATCAGCGatataaatgcatgtaaaaCATGTGGCATTACTTCGGCTCATTGTTGCTTGTGAAATGCCAGACCTGTCTCCAATTTTCTGTTAAAATTACTGAAAGAAAATCGACTAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404485.2 True 719 lncRNA 0.40 3 21488112 21492076

Neighbor

gene id symbol gene type direction distance location
LOC113543961 NA coding upstream 14994 21468412 ~ 21473118 (+)
LOC113523962 pla2g1b coding upstream 21969 21462543 ~ 21466143 (+)
LOC113544185 pla2g1b coding upstream 36039 21447235 ~ 21452073 (+)
prkab1a prkab1 coding upstream 42848 21435902 ~ 21445264 (+)
phf24 phf24 coding upstream 63265 21393821 ~ 21424847 (+)
ppp2r2ab ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801 coding downstream 779990 22272066 ~ 22289033 (+)
bnip3lb bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042 coding downstream 799005 22291081 ~ 22310553 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding downstream 823218 22315294 ~ 22351716 (+)
igsf9a LOC108277156 coding downstream 887844 22379920 ~ 22426821 (+)
vsig8a LOC108277295 coding downstream 1214885 22706961 ~ 22766275 (+)
G272803 NA non-coding upstream 497561 20990343 ~ 20990551 (+)
G272770 NA non-coding upstream 556529 20927622 ~ 20931583 (+)
G272470 NA non-coding upstream 738465 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 750612 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 762918 20659603 ~ 20725194 (+)
G273248 NA non-coding downstream 470588 21962664 ~ 21962867 (+)
G273258 NA non-coding downstream 489903 21981979 ~ 21982191 (+)
G273226 NA non-coding downstream 545763 22037839 ~ 22038149 (+)
G273473 NA non-coding downstream 1070028 22562104 ~ 22562325 (+)
G273600 NA non-coding downstream 1309005 22801081 ~ 22840120 (+)
LOC113543995 NA other upstream 9232 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 126368 21359519 ~ 21361744 (+)
G272408 NA other upstream 945158 20540325 ~ 20542954 (+)
G272374 NA other upstream 1058969 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 1089165 20398280 ~ 20398947 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 430475 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 877180 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1130352 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 1557736 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 1752484 23244560 ~ 23274653 (+)

Expression


Co-expression Network