LOC113539559 (LOC100304472,LOC108440331,LOC107749469,LOC108440330)


Basic Information

Item Value
gene id LOC113539559
gene name LOC100304472,LOC108440331,LOC107749469,LOC108440330
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 10095530 ~ 10099522 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935383.2
GAACAACCAGAGATCCACAGGTGCCCTTGAGAAAGAGACAGCTGAGAgaataacataaaaacatagTTAGAATAAGCAAGTTGTAAGAAGTGCAGAAGAGGTAGAGGGATAAATAAGCAAGCAATTCAGGGCATCACTCAAAGACGTTCAAATCCTCACAATGGCAGAGCAGTGGGGAGAAGCTATGTTTGCAGCCAGGCGGCGAGGTGATGATACAACACGGGAAGCAGCCTTTGTATACACCAACAGCAATAACACCAGAGatCCATTTGAGGGACCCAACTATCACATTGCCCCAAGATGGGTGTACCATCTTGCAACATTATGGATGTTTATTGTGGTTATTGCCTCAACCTTCACTAATGGCCTGGTACTGGTAGCCACAGCCAAATTCAAGAAGCTTCGGCACCCTCTAAACTGGATCTTGGTAAACCTTGCGATAGCCGATCTTTTAGAGACACTATTTGCCAGCACTGTTAGTGTCTGTAACCAAATATATGGCTACTTTGTCCTTGGACACCCACTTTGCATTTTTGAGGGTTTCACCGTTGCTTGCTGTGGTATTGCTGGTTTGTGGTCTCTGACTGTCATATCATTTGAGAGATGGGTGGTGGTGTGCAAACCTTTCGGAAATGTAAAATTTGATGGTAAATGGGCAGCTGGTGGCATTATCTTCACCTGGGTCTGGTCTGCATTTTGGACTGCACTTCCTATCTTTGGATGGAGCAGGTATTGGCCTCATGGCCTGAAGACCTCTTGTGGACCAGATGTATTTAGCGGAAGTGAAGACCCTGGAGTTCAGTCTTACATGATTGCGCTGATGATCACCTGCTGCATTATCCCCTTGGCCGTTATCATTCTCTGCTACCTTGCTGTGTGGATGGCCATCCGTGCTGTTGCAGCACAACAGAAGGAATCTGAATCAACACAAAAGGCTGAAAAGGAAGTCACCAGAATGATTTTTGTCATGATTGCTGCTTATGTTTTCTGCTGGGGACCATACACTTTCTTTGCCTGCTTTGCAGCTGCTAACCCTGGTTATGCCTTTCACCCACTGGCAGCAGCCATGCCTGCCTACTTTGCAAAGAGCGCCACCATCTACAACCCCattatttatgtctttatgaACCGACAGTTCCGTTCATGCATCATGCAGCTCTTTGGAAAGAAGGTTGATGATGGCTCTGAAGTGTCTTCTACCTCCAAAACAGAAGTCTCCTCTGTGGCACCTGCATAAATATCTTCTGACTTGTGGCAAATGAAAAAGATTTTAGAACACTGAACTTCTTGATTTCTTCACTTTTTGTTACCCTGTAATACTCAACAGTCTAAAATATCCAAGAATATGGAATCAAACTCAGTATTGTGTCAgctttattgtattttgtaaGAAGTCCAGAAATTTTggagtgaaaaaagtgaaattcaCTGAATTTAATCCAGTAAGACATATCTATAAAGACATATCTGTAtttttacaatataatattatgcATGTGGTTGTAGCAAGCCCCCATGATCATTTCTTAATGCAAACATACTTTAAAACCATGCTActcaatataaaaaatgtattgttaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04251 OPN1LW, OPN1MW; long/medium wavelength-sensitive opsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935383.2 True 1581 mRNA 0.42 6 10095530 10099522

Neighbor

gene id symbol gene type direction distance location
lmod1b lmod1 coding upstream 522241 9568051 ~ 9573289 (+)
ipo9 ipo9 coding upstream 607501 9437233 ~ 9488029 (+)
kdm5ba kdm5b,LOC108254769,LOC107600688,LOC107749493 coding upstream 659649 9410252 ~ 9435881 (+)
rabif rabif,LOC107601129 coding upstream 685642 9407525 ~ 9409888 (+)
LOC113539578 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107655073,LOC107749489 coding upstream 715545 9358819 ~ 9379985 (+)
gnl3l gnl3l coding downstream 2792 10102314 ~ 10138886 (+)
mon1bb LOC108255044,LOC107564673,LOC107727858,LOC108444170,LOC107691359,LOC107749456,LOC107685668 coding downstream 180998 10280520 ~ 10289815 (+)
ppcs ppcs coding downstream 961486 11061008 ~ 11064101 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding downstream 979538 11079060 ~ 11107165 (+)
rbm12 rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817 coding downstream 979559 11079081 ~ 11086693 (+)
G305232 NA non-coding upstream 23062 10072249 ~ 10072468 (+)
G305228 NA non-coding upstream 26893 10068433 ~ 10068637 (+)
G305218 NA non-coding upstream 46091 10049224 ~ 10049439 (+)
G305214 NA non-coding upstream 60931 10034395 ~ 10034599 (+)
G305188 NA non-coding upstream 81989 10012543 ~ 10013541 (+)
G305210 NA non-coding downstream 39766 10139288 ~ 10139730 (+)
G305368 LOC108255174 non-coding downstream 131010 10230532 ~ 10232192 (+)
G305382 NA non-coding downstream 154368 10253890 ~ 10254274 (+)
G305383 NA non-coding downstream 155073 10254595 ~ 10255330 (+)
G305392 NA non-coding downstream 232221 10331743 ~ 10331947 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other upstream 543769 9536125 ~ 9551761 (+)
nfasca nfasc other upstream 1533828 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 2068601 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 3316172 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 3592894 6498060 ~ 6502636 (+)
G305515 NA other downstream 413149 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 664752 10764274 ~ 10773442 (+)
G305727 NA other downstream 1012217 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 1041714 11141236 ~ 11178473 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 1115230 11214752 ~ 11221540 (+)

Expression


Co-expression Network