pan3 (pan3,LOC107705213)


Basic Information

Item Value
gene id pan3
gene name pan3,LOC107705213
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17761531 ~ 17796521 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU395319
TTGTTTTTGCACTTGGAGCAGTTTTGGCATTCTCTCAGGACGACTCGACCCGAATTAAGCCAATGATTGAATGTGTTTTGACCCGTCATTGGTGACCCTTTCCAATCATGAGTCGAGCTACAGTGGAAAAGGTGCGACGTGAGCAGGTCTGGCTGAGCCACACTGAACATGGAGGGCATAGGATGGAGCATGCTATACTGAGCTGATGTGAGGATGCTGTGTATCGAATTgtacttttgtgtttttctttttgtgataGTCAAAACAGCAGTGAATCTGGTGCCaagcctctcctttttttttttttttttcctcctccccTCCCCAGAAATACACACTTGAGTCCTTCCAGCGTATCCAGCCAACACGCAGCTAATtctcatatcatatcatgaaTATCATGACCCTATTCCCCAAGGATCACACTCCAGTAAAAATGTGTGCtaacccttacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacagcctaaatTAGTTGACACTTACAAATTGCAGTTATATGTGGG
>XM_026937954.2
cggCGCTGGTTGGTGCTTTAGCTGAACGGAGCCCGAAAACAACAACAGCGTGATCCGAGCTGAACAACAGCGCCgagctgctttctttcttttacttttttctttttctttttttttttaaatttaaacgtGCACTGCGATCATTTCTGAAGCGCGATGGCCGTCTGACGGTTCGGTCTGGATGATACGGTTGATTTTTGTTGCCGTTTTTTCATGCGTTTGGCTGGGATTAAAGTGTTTTAGGTCTCCCTATGTTTGAGCGTCTTCCGGCGGCGGTGGCGGCATCAGCGGTGCCATGAATAGTGGACTCCCGGTCTCGGCTGCTCCGCTCGGCGGTGTCGGAATACCGGGCGTCAAGGTGAAATTCTGCCGCTATTACGCGAAAGACAAGACTTGCTTTTATGGCGACGATTGCCAGTTCTTGCATGAGGATCCGTCCGCGGCGAGTGCTGTGCAcggcggaggaggaggaggcagcgGCAGCCCGGTGACTTTAGCCCTCGCCGGCGGGGCAGTGAGCACCGCGGCGGCTGTAGCAGGGTACCCGCTCGCTGGGAACGCAGTAGCGGCGTGTCCGAGCGGAGGTCCGGCGGGTGTCGCCAAAAAGAGTGATGCTCTCGGGCCTGCAGGAGCGGCTCTGGACGGCCAGTTGTTGAGCATCGCTGGGATGGACGGTGGGGCGCTCAGTGATGCCAATCTGACCAACTCCTATTTCAGCAGCAGCTTTATTGGAGTCAATGGGTTTGGAAGCCCAGCAGAGTCCAAATACTCAATGATGCAGaggatgaccagcagcagcagctccccGAGTCTCCTTAATGACGGTGCCAAGAATTTCAGCCACAGCGCTCATGATCCTGTAAGTTCCCCCACTTCCTCCCTGTTTAGCGACTTTGGTGCTTTGAGCATAACACAGAGGAGAAAGGCTCCCAATCCCGCTGCCACAGAGTTCATCCCTAAAGGAGCACCACGCATGTCCACGATGTCTCAGGCAGCTGTACCGACATTTCCCTCGCCGCTATTCCCCCATCCCAGTCTGAGCGGCTCAGCCGCAGCGGGACTCGCGCCAGGTATGTCTTTGTCTGCTGGGTCGTCTCCTCTCCACTCGCCCAAAATCACTCCCCACACCTCACCCGCCCCCCGGCGCCGTAGCCACACCCCAAACCCCAACCCAGCCAATTACATGGTGCCCACCACGGCGTCAGAGCAAGGAGGCGGTGCCCACATCATCCAGAAGGAGACTGTAGGAGGAACCACCTACTTTTACACTGATAACACCCCTGCTCCCATGACTGGAATGGTGTTTCCAACGTACCATATCTACCCACAAACAGCACCTCATGTGGCGTACATGCAGCCCAAAGCCAACGCTCCGTCCTTCTTTATGGCTGACGAGCTCAGACAGGAGTTGATTAACAGGCATTTGATAACGATGGCCCAAATCGATCAGTCTGAGAACCCAGgagTCCCGTCTGAGGTGGACAGCTACCATAGCCTGTTTCCCCTGGAGCCTCTTCTGCCCCCCAACCGCCTCCAGAAAACCAGCAACTTCAGTTACATTACTTCCTGTTACAAGGCGGTCAACAGCAAAGATGACCTGCCTTACTGTCTCAGGAGGATACATGGCTTCAGGCTGGTGAACACCAAGTGCATGATGCTGGTCGACATGTGGAAGAAGATCCAGCACTCCAATGCTGTCACTCTCCGAGAAGTCTTTACCACCAAGGCTTTTGGAGATCACTCGTTGGTGTTCTCTTATGACTTCCATGCCGGGGCTGAGACCATGTACAGCAGGCACTTCAACGACCCAACGGCTGACTCTTATTTCACCAAGAGGAAGTGGGGTCCACACgagcctcctcctcctcggcAGCATGCCGGTCTGCTGCCTGAGTCTCTGATCTGGGCCTACATCGTGCAGCTGAGCTCGGCCCTGCGCACCATCCACACTGCCGGCCTGGCCTGCAGGGTCATGGACCCCAGCAAGATCCTCATCACTGGAAAGActcgGTTACGGGTGAACTGTGTAGGCGTGTTTGATGTCTTAACATTTGACAATAGTCAGACCAACCACTTGGCCCTCATGCCCCAGTACCAGcaAGCAGATCTGATCTCTCTGGGGAAGGTGGTATTGGCGCTGGCCTGCAACTCTCTGGCTGGCATTCAGAGAGAGAACTTGCAGAAAGCCATGGAGCTCGTGTCTATCAACTACTCATCCGACCTCAAGAACCTCATCCTGTACCTGCTTACGGAGCAGAGTCGCCTGCGTAGCGTCAATGACATCATGCCCATGATCGGAGCCAGATTTTACACTCAGCTGGACGCTTCACAGATGAGGAATGACGTCATTGAGGAAGATCTGGCCAAGGAGGTGCAGAACGGCCGCTTGTTCCGCCTTCTGGCCAAACTGGGAACCATCAATGAGAGACCAGAATTCCAGAAGGATCCGACGTGGTCTGAGACAGGAGATCGCTACCTGCTGAAGCTCTTCAGAGATCACCTGTTCCACCAGGTGACTGAAGCAGGCACGCCTTGGGTCGACCTGAGCCACATTGTGTCGTGTCTTAATAAACTGGATGCCGGCGTGCCCGAGAAGATCAGCCTGGTGTCTCGGGATGAGAAGAGCGTGCTGGTGGTGACCTACTCAGACCTAAAGCGCTGCTTTGACAGCACCTTCCAGGAACTGCTGGCTGCCGCCAACGGCTCACTGTAGCGCCCCTCACAGGCATGGGGTGGGACTGCCTGAATCGGAGCACATTGCACTACAGTGAACGAAGACGGGCACAGCTCGAACGATCTTAACGGCCAGAACGGTGCCAGCTGGTTGCTCACCTCCAGTCAGATACACTGTCCTAAAAGGaagttgtacttttttttcctaaagtgtatttttttagttttcctaAACTCACAGCTTCTGAATTCTGAACCTGTTGACAGCTGTGATGAATTTTTTTAGACACggggaacaacaacaacattattgTCGATAAGAAACATTAAGGACAATttcctgcttttatttttcttggtttttatttttttccattggaGGATGCACTAAGAATTTtaagtttttcctttttttaaaaaataaaaataaaaaaatcatgtgggTGGTGTCCACAGGGTGACACAAGAAAAGGATGAGGACTAGGTTTCCGGGGAAAAAAGCGATCTCTTCTTTAGGCACTGCGAGTCGGGACAGACCACTTGCCACGTGTGCAGAACCCAGACCACTTTCTGCCTCCGCTGTCATTTAGATAGGACAAACCATTGTGCTTATAAGAGAGGGGAGGGGGCGGCCAAATCGCTAAGAAGACTGACCACTGTTTGAACATGAGGCATGTGGTGTGATATGGTATGCTCCCGTTGTCCTGCACCCCCCCGCCAGCTGGTGAGACTTTCCAGAGTCACATGTGATTGCAAAGAGAAGGTTGCTTCATTACTGCCTGGGTTCTCACTCTGTCCATGTAACTTTGGTGGCACTGACAAAGGGGTGCTTTCTCCTGTTGCTGTGTAAGACTTTATTAGACTTATGCAACCTCcattaaattttttctttttttttttttttttttttaaattttcatggATGCTTTTTGCAATGTGATATGAATCAACAATTGTGTGAatggatttttcttttgtttcgtTTGTTTGTTGTCTTTTTCAATCAGGCTTTTTAGGTCTGGAAAGGAACCAAAGAACTGGACCACATTTAGGAAGGGAACCAGTTCTGCCTCTGTGGAATCTCCTCTCCCTCTGCTCCCTTTTTGTGGAGCAATCATTTAGATTACGCTCACATTTTCACTCTTCCCCACTCTCCAAGCTGGTTGTTGTATTTTGGACTGAATCAATAGCTCTTATGTGGTGgttcttttcttttacacacCCAGCTCTTGCGCAGTGATACATGATGAGATGTTTGAACTCTcactctgaccaatcccactaaAACTTCTGGGAAGGATGGTGGAAAGGGTAGGGCCAGTTTGAGGgttgtgtttgaattttttttttttaacaccacatTTCTCACCTGAAGATCATGTGATGGTAACATGCTGGGAAAACGGAACAGCCGTTGATAAAACAGCAGGTAACAGAGGGGGAGTGTTTGGGGGGTTGGGGTGGGGGGTAGAGTTGGTTGTTTTTGCACTTGGAGCAGTTTTGGCATTCTCTCAGGACGACTCGACCCGAATTAAGCCAATGATTGAATGTGTTTTGACCCGTCATTGGTGACCCTTTCCAATCATGAGTCGAGCTACAGTGGAAAAGGTGCGACGTGAGCAGGTCTGGCTGAGCCACACTGAACATGGAGGGCATAGGATGGAGCATGCTATACTGAGCTGATGTGAGGATGCTGTGTATCGAATTgtacttttgtgtttttctttttgtgataGTCAAAACAGCAGTGAATCTGGTGCCaagcctctcctttttttttttttttttcctcctccccTCCCCAGAAATACACACTTGAGTCCTTCCAGCGTATCCAGCCAACACGCAGCTAATtctcatatcatatcatgaaTATCATGACCCTATTCCCCAAGGATCACACTCCAGTAAAAATGTGTGCtaacccttacacacacacacacacacacacacacacaaacactcacacaataTCTTAGTACTTTTAATGCCCTACTTGTGTTTCATTGTCTCACATTTTGCAATATTTGTGTGTACAAcagtattttaataaagaatacaaaacttta

Function

symbol description
pan3 Predicted to enable ATP binding activity; RNA binding activity; and metal ion binding activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm. Predicted to be part of PAN complex. Predicted to be active in P-body. Orthologous to human PAN3 (poly(A) specific ribonuclease subunit PAN3).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU395319 False 557 lncRNA 0.44 2 17781820 17796521
XM_026937954.2 True 4742 mRNA 0.50 18 17761531 17782411

Neighbor

gene id symbol gene type direction distance location
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding upstream 21946 17727853 ~ 17739585 (+)
boc boc coding upstream 55413 17678898 ~ 17706118 (+)
LOC113541191 cfap44 coding upstream 107918 17636383 ~ 17653613 (+)
spice1 spice1 coding upstream 132046 17621946 ~ 17629485 (+)
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding upstream 156338 17543823 ~ 17605193 (+)
chodl chodl coding downstream 145907 17942428 ~ 17951626 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding downstream 164467 17960988 ~ 17963471 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding downstream 176683 17973204 ~ 17983420 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding downstream 291126 18087647 ~ 18097915 (+)
bhlhe22 bhlhe22 coding downstream 418342 18214863 ~ 18217206 (+)
G333799 NA non-coding upstream 3602 17757724 ~ 17757929 (+)
G333798 NA non-coding upstream 4733 17756558 ~ 17756798 (+)
G333797 NA non-coding upstream 4989 17756325 ~ 17756542 (+)
G333795 NA non-coding upstream 5249 17741401 ~ 17756282 (+)
G333779 usf3 non-coding upstream 49151 17707722 ~ 17712380 (+)
G333801 LOC108256577,LOC108442200 non-coding downstream 53274 17849795 ~ 17850795 (+)
G333937 NA non-coding downstream 108432 17904953 ~ 17905225 (+)
G333938 NA non-coding downstream 110845 17907366 ~ 17907681 (+)
G333966 NA non-coding downstream 216406 18012927 ~ 18015594 (+)
G333953 eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255 non-coding downstream 225218 18021739 ~ 18026962 (+)
rnf6 rnf6,LOC106590444 other upstream 219144 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 459527 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 651504 17100164 ~ 17110027 (+)
G332636 NA other upstream 2194868 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 2446563 15134353 ~ 15314968 (+)
G333943 LOC108256468 other downstream 190241 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 518833 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 671357 18467878 ~ 18486009 (+)
G334373 NA other downstream 896628 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 915527 18712048 ~ 18747477 (+)

Expression


Co-expression Network