G336111


Basic Information

Item Value
gene id G336111
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 593316 ~ 593539 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398008
TCTGGTTTGCTCACCTTTAAATGCATCAGTGTGTTTTACATCAAGCCCTGCTTTGTCACGACAGGCGATAAAGTGAAAAATAGCGTCATTTGTTCTCTTCCTCCGACTCATTCTCGAAACCATGCTTTCACCTTTATTACACTTTTCACCAACTGCACCGATTCTGAAGTCATCTCTATGGAAAATGAGTTATATGTACACTGTCTAGCATTAGCAAAATAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398008 True 224 lncRNA 0.39 1 593316 593539

Neighbor

gene id symbol gene type direction distance location
LOC117595880 NA coding upstream 30998 561278 ~ 562318 (+)
LOC117595881 NA coding upstream 52595 539688 ~ 540721 (+)
LOC117595859 NA coding upstream 96998 485216 ~ 496318 (+)
LOC117595878 LOC108259807 coding upstream 153700 428318 ~ 439616 (+)
LOC117595858 NA coding upstream 199126 393549 ~ 394190 (+)
LOC113528990 LOC108438405,LOC108438407,LOC108256992,LOC107727715,LOC107753917 coding downstream 66329 659868 ~ 664284 (+)
LOC113528991 LOC108256995,LOC108256994,LOC108438408,LOC108438412,LOC107666325,LOC107753917 coding downstream 81558 675097 ~ 678530 (+)
LOC113529047 LOC108256995,LOC108256994,LOC108438408,LOC107666325 coding downstream 88741 682280 ~ 685488 (+)
LOC113528992 LOC108257051,LOC108438410 coding downstream 97217 690756 ~ 693496 (+)
LOC113528988 LOC108257047 coding downstream 112868 706407 ~ 711509 (+)
G336078 NA non-coding upstream 152531 440439 ~ 440785 (+)
G336041 NA non-coding upstream 188873 354030 ~ 404443 (+)
G336016 NA non-coding upstream 322433 213146 ~ 270883 (+)
G335897 LOC107737118 non-coding upstream 448845 127038 ~ 144471 (+)
G335896 NA non-coding upstream 450786 125194 ~ 142530 (+)
G336126 NA non-coding downstream 20733 614272 ~ 620153 (+)
G336115 NA non-coding downstream 29193 622732 ~ 626949 (+)
G336141 NA non-coding downstream 38235 631774 ~ 632301 (+)
G336143 NA non-coding downstream 50392 643931 ~ 644138 (+)
G336167 NA non-coding downstream 174656 768195 ~ 772828 (+)
G336034 NA other upstream 306101 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 145830 739369 ~ 749674 (+)
G336172 NA other downstream 200578 794117 ~ 794695 (+)
G336213 NA other downstream 380130 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 539416 1132955 ~ 1136124 (+)
G336334 NA other downstream 676270 1269809 ~ 1335574 (+)

Expression


Co-expression Network