G336143


Basic Information

Item Value
gene id G336143
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 643931 ~ 644138 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398045
ttttgccacatggttttggGTGATTCAGTTGAGCTTGGaggttttttgtgagaaagggcttccgtctagccgccTACCCCGTAGCCCAGacgtgaagaatatgagagattgttgtcacgtGTAGAGAGTAGTCAGTACgtgtcagatgttcctgcagctcctttaatgttccTGTAGGTCTCTTGGTAGCCTCCCTGgttagtttttg

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU398045 True 208 lncRNA 0.48 1 643931 644138

Neighbor

gene id symbol gene type direction distance location
LOC117595880 NA coding upstream 81613 561278 ~ 562318 (+)
LOC117595881 NA coding upstream 103210 539688 ~ 540721 (+)
LOC117595859 NA coding upstream 147613 485216 ~ 496318 (+)
LOC117595878 LOC108259807 coding upstream 204315 428318 ~ 439616 (+)
LOC117595858 NA coding upstream 249741 393549 ~ 394190 (+)
LOC113528990 LOC108438405,LOC108438407,LOC108256992,LOC107727715,LOC107753917 coding downstream 15730 659868 ~ 664284 (+)
LOC113528991 LOC108256995,LOC108256994,LOC108438408,LOC108438412,LOC107666325,LOC107753917 coding downstream 30959 675097 ~ 678530 (+)
LOC113529047 LOC108256995,LOC108256994,LOC108438408,LOC107666325 coding downstream 38142 682280 ~ 685488 (+)
LOC113528992 LOC108257051,LOC108438410 coding downstream 46618 690756 ~ 693496 (+)
LOC113528988 LOC108257047 coding downstream 62269 706407 ~ 711509 (+)
G336141 NA non-coding upstream 11630 631774 ~ 632301 (+)
G336115 NA non-coding upstream 16982 622732 ~ 626949 (+)
G336126 NA non-coding upstream 23778 614272 ~ 620153 (+)
G336111 NA non-coding upstream 50392 593316 ~ 593539 (+)
G336078 NA non-coding upstream 203146 440439 ~ 440785 (+)
G336167 NA non-coding downstream 124057 768195 ~ 772828 (+)
LOC113528997 NA non-coding downstream 131737 775875 ~ 779026 (+)
G336202 NA non-coding downstream 245680 889818 ~ 906892 (+)
G336209 NA non-coding downstream 261101 905239 ~ 906488 (+)
G336241 LOC108257176 non-coding downstream 362094 1006232 ~ 1008093 (+)
G336034 NA other upstream 356716 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 95231 739369 ~ 749674 (+)
G336172 NA other downstream 149979 794117 ~ 794695 (+)
G336213 NA other downstream 329531 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 488817 1132955 ~ 1136124 (+)
G336334 NA other downstream 625671 1269809 ~ 1335574 (+)

Expression


Co-expression Network