G336161 (LOC108257052)


Basic Information

Item Value
gene id G336161
gene name LOC108257052
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 739369 ~ 749674 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398067
aaaagtgtgtgttactgatgtCTGACTGGATTTACCTGTGCCATGttaataatgttgttgttttaaggACAGGGATGACATTCTTGGAGGTCAAGTTCCACAGCTAAGCCCGAGTATAAAAAGGAGACTCGATATGTTTATTCTCTCACCCTCTGTTTCGAGTCGAATCGTCAGACGGTGAGTTACAAGCGAAAGAACGGCAGCATGGCAAGTTTCTTCTCCAGCTCCTCTATGACCGGTAGATCCTCCAGGTCGAGCCGGGTCGTGGGTGCTTCTCGTGCCGTCAGTGTTTATGGAGGAGCGGGAAGTTCAGACGTGCGAATCTCCGCCGCACCCTTCAGGTTCTCGCAGGTCCATTACGGCTCCCTGGGCTCGGATGACTCTGCAGTGATCGGAAACGAGAAGCTGACGATGCAGAACCTGAATGACCGTCTGGCCTCCTACCTGGCGAAGGTACACAGTCTGGAGAAGGCCAACACCGAACTGGAGCTCAAGATCCGCCAGTTCCTTGACAGCAAGACATCACCCAAGGCTCGAGACTACTCTGCCCACTTCGCCACCATCAGTGACCTGCAGAACAAGATCTACACAGCTATCCACCTGAAGGGAGGAGTGCTCCTCAGCATGGAGAACTCACGCCTGGCCATGGAGGACTTCAAGGTTAAGTATGAGAACGAGTTGGCGATGCATCAGACGGTGGAGGGCGACATCGCCGGGCTGAAGCGGCTGCTCGAGGATCTCAAATTGTCTAAGCAGGACCTGAATCTGCAGCTGGAAGGGCTGAAGGAGGAACTCGCCTTCCTCAAAAAGAACCACGAGGAGGAGATGATATTGGCGCGTCAGCAGATGAGCGGGCAGGTACACGTGGAGGTCGACGCCGCGCCTCAGGAGGACCTCACTAAAGTCCTGGCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398067 True 913 TUCP 0.54 4 739369 749674

Neighbor

gene id symbol gene type direction distance location
LOC113528988 LOC108257047 coding upstream 27860 706407 ~ 711509 (+)
LOC113528992 LOC108257051,LOC108438410 coding upstream 45873 690756 ~ 693496 (+)
LOC113529047 LOC108256995,LOC108256994,LOC108438408,LOC107666325 coding upstream 53881 682280 ~ 685488 (+)
LOC113528991 LOC108256995,LOC108256994,LOC108438408,LOC108438412,LOC107666325,LOC107753917 coding upstream 60839 675097 ~ 678530 (+)
LOC113528990 LOC108438405,LOC108438407,LOC108256992,LOC107727715,LOC107753917 coding upstream 75085 659868 ~ 664284 (+)
si:dkey-89b17.4 LOC108257022,LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC107727719,LOC107665149 coding downstream 56631 806305 ~ 817243 (+)
utp18 utp18 coding downstream 144092 893766 ~ 906770 (+)
LOC113529000 NA coding downstream 160898 910572 ~ 950118 (+)
LOC117595860 NA coding downstream 199801 949475 ~ 951383 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding downstream 274804 1024478 ~ 1033504 (+)
G336143 NA non-coding upstream 95231 643931 ~ 644138 (+)
G336141 NA non-coding upstream 107068 631774 ~ 632301 (+)
G336115 NA non-coding upstream 112420 622732 ~ 626949 (+)
G336126 NA non-coding upstream 119216 614272 ~ 620153 (+)
G336111 NA non-coding upstream 145830 593316 ~ 593539 (+)
G336167 NA non-coding downstream 18521 768195 ~ 772828 (+)
LOC113528997 NA non-coding downstream 26201 775875 ~ 779026 (+)
G336202 NA non-coding downstream 140144 889818 ~ 906892 (+)
G336209 NA non-coding downstream 155565 905239 ~ 906488 (+)
G336241 LOC108257176 non-coding downstream 256558 1006232 ~ 1008093 (+)
G336034 NA other upstream 452154 286849 ~ 287215 (+)
G336172 NA other downstream 44443 794117 ~ 794695 (+)
G336213 NA other downstream 223995 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 383281 1132955 ~ 1136124 (+)
G336334 NA other downstream 520135 1269809 ~ 1335574 (+)
G336350 cdk12 other downstream 576142 1325816 ~ 1327507 (+)

Expression


Co-expression Network