G336209


Basic Information

Item Value
gene id G336209
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 905239 ~ 906488 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398135
gtgtgtgtgtgtgtgtctgtatgtatgtgtctgtctgtgtgtgtctgtatgtatgtgtgtgtgtctgtataggtgtctgtgtgcgtgtctgtaggtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtagttcagtgtgtgttcttacCTCCAGTCATCAAAATGGAAGCCCACTGTGTAGAATAAATGAAGTATATTCCTGTCTCCACACATcacgatttgagacacagccatgTAGAGTAACGGGGAAacggtgttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398135 True 258 lncRNA 0.45 2 905239 906488

Neighbor

gene id symbol gene type direction distance location
si:dkey-89b17.4 LOC108257022,LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC107727719,LOC107665149 coding upstream 87996 806305 ~ 817243 (+)
LOC113528988 LOC108257047 coding upstream 193730 706407 ~ 711509 (+)
LOC113528992 LOC108257051,LOC108438410 coding upstream 211743 690756 ~ 693496 (+)
LOC113529047 LOC108256995,LOC108256994,LOC108438408,LOC107666325 coding upstream 219751 682280 ~ 685488 (+)
LOC113528991 LOC108256995,LOC108256994,LOC108438408,LOC108438412,LOC107666325,LOC107753917 coding upstream 226709 675097 ~ 678530 (+)
LOC113529000 NA coding downstream 4084 910572 ~ 950118 (+)
LOC117595860 NA coding downstream 42987 949475 ~ 951383 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding downstream 117990 1024478 ~ 1033504 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644 coding downstream 132477 1038965 ~ 1063015 (+)
LOC113529039 LOC108257110,LOC105013290 coding downstream 159279 1065767 ~ 1076546 (+)
LOC113528997 NA non-coding upstream 126213 775875 ~ 779026 (+)
G336167 NA non-coding upstream 132411 768195 ~ 772828 (+)
G336143 NA non-coding upstream 261101 643931 ~ 644138 (+)
G336141 NA non-coding upstream 272938 631774 ~ 632301 (+)
G336115 NA non-coding upstream 278290 622732 ~ 626949 (+)
G336241 LOC108257176 non-coding downstream 99744 1006232 ~ 1008093 (+)
G336243 NA non-coding downstream 109484 1015972 ~ 1016631 (+)
G336214 NA non-coding downstream 113751 1020239 ~ 1064155 (+)
G336246 NA non-coding downstream 121568 1028056 ~ 1127409 (+)
G336245 sf3b4,LOC102792253 non-coding downstream 211155 1117643 ~ 1152914 (+)
G336172 NA other upstream 110544 794117 ~ 794695 (+)
G336161 LOC108257052 other upstream 155565 739369 ~ 749674 (+)
G336034 NA other upstream 618024 286849 ~ 287215 (+)
G336213 NA other downstream 67181 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 226467 1132955 ~ 1136124 (+)
G336334 NA other downstream 363321 1269809 ~ 1335574 (+)
G336350 cdk12 other downstream 419328 1325816 ~ 1327507 (+)
G336433 parp10 other downstream 750829 1657317 ~ 1659459 (+)

Expression


Co-expression Network