G336213


Basic Information

Item Value
gene id G336213
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 973669 ~ 976321 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398147
cagaatttcagcctcattttcctgatatttacatctaaatgtgttaaacaacttagaacatggcaccttttctGACAGACAACCCAGTTTTAGGTGagaaaaagtattggaacacatAGTtctaaagtaaataacacttaatatttggtagcATGTCTCTCGCTTGTAATAACTGCATCACGCTGGTgacacactgacatcaccaaactgctgcgttcttcttttgtgttgcttttccaggcttgtagcacagcttctttcagttgttgttagttttggggggtttctcccttcagtctcctcttcaggaggtgaaatactgctcagttgggttaaggtctgctgatggactcgtccagtctaaaaccttccactttccccctgatgaagtgctttgttgtgttgctgtgtgttttgggtcgttgtcttgctgcatgatgaagctcctcctgattagattggatgcatttctctgtaaattagcagacagaatgtttctgtaggtttctgaattcattctgctgctaccatcatgagttccatcatctataaagattagtgagtctgttccagaagcagccatgcaagcccaagccatgacactacctccaccatgcttcacccatgagctcgtatgttttgagcagatcctttctttctccacactttggccttttcaTCACTTTGATAGAGGTTAATttttgttccagaacttttgtggttcatctctgtatttctctgtgaattccagtctggccatctgactcttactgctgatgagaggtttgcatcttgtggtttgGCCTCTATagttctgctcttgaagtcttcttcaaatggtggattatgataccttcaccctgccctgtggaggttggtggtgatgtcactgactgttgtttttgggtttttttcttcacagctttcagaatgtttctgtcatcaactgctgctgttttctttgGTCGActtgttccatgtctggttatTAGaataccagtggtttcttttgttttcaggacattccacatTGTTGTATTGgttatgcccaatgcttgtgaaATGTCTCGGATggattttctgtcttttctcagcttcaaaatggcttgctctTCTCACACAGGAGGCAGTGTTAGCGTTAGATACACTGGAGTCAGGGTTAACTACACAGGAGGCAGTGTTAGCATTAGATACACTGGAGTCAGGGTTAACTACGCAGGAGGCAGTGTTAGCGTTAGATACACTGGAGTCAGGGTTAACTACACAGGAGGCAATGTTAGCGTTAGATACACTGGAGTCAGGGTTAACTACGCAGGAGGCAGTGTTAGCGTTAGATACACTGGAGTCAGGGTTAACTACACAGGAGGCAGTGTTAGCGTTAGATACACTGGAGTCAGGGTTAACTACGCAGGAGGCAGTGTTAGCGTTAGATACACTGGAGTCAGGGTTAACTACACAGGAGGCAGTGTTAGCGTTAGATACACTGGAGTCAGGGTTAACTACACAGGAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398147 True 1512 TUCP 0.44 2 973669 976321

Neighbor

gene id symbol gene type direction distance location
LOC117595860 NA coding upstream 22286 949475 ~ 951383 (+)
LOC113529000 NA coding upstream 23551 910572 ~ 950118 (+)
utp18 utp18 coding upstream 66899 893766 ~ 906770 (+)
si:dkey-89b17.4 LOC108257022,LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC107727719,LOC107665149 coding upstream 156426 806305 ~ 817243 (+)
LOC113528988 LOC108257047 coding upstream 262160 706407 ~ 711509 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding downstream 48157 1024478 ~ 1033504 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644 coding downstream 62644 1038965 ~ 1063015 (+)
LOC113529039 LOC108257110,LOC105013290 coding downstream 89446 1065767 ~ 1076546 (+)
LOC113529037 samd14 coding downstream 104673 1080994 ~ 1103079 (+)
gabpb2a LOC108257329 coding downstream 160756 1137077 ~ 1147087 (+)
G336202 NA non-coding upstream 66777 889818 ~ 906892 (+)
G336209 NA non-coding upstream 67181 905239 ~ 906488 (+)
LOC113528997 NA non-coding upstream 194643 775875 ~ 779026 (+)
G336167 NA non-coding upstream 200841 768195 ~ 772828 (+)
G336143 NA non-coding upstream 329531 643931 ~ 644138 (+)
G336241 LOC108257176 non-coding downstream 29911 1006232 ~ 1008093 (+)
G336243 NA non-coding downstream 39651 1015972 ~ 1016631 (+)
G336214 NA non-coding downstream 43918 1020239 ~ 1064155 (+)
G336246 NA non-coding downstream 51735 1028056 ~ 1127409 (+)
G336245 sf3b4,LOC102792253 non-coding downstream 141322 1117643 ~ 1152914 (+)
G336172 NA other upstream 178974 794117 ~ 794695 (+)
G336161 LOC108257052 other upstream 223995 739369 ~ 749674 (+)
G336034 NA other upstream 686454 286849 ~ 287215 (+)
mllt11 mllt11 other downstream 156634 1132955 ~ 1136124 (+)
G336334 NA other downstream 293488 1269809 ~ 1335574 (+)
G336350 cdk12 other downstream 349495 1325816 ~ 1327507 (+)
G336433 parp10 other downstream 680996 1657317 ~ 1659459 (+)
polr2k NA other downstream 698719 1675040 ~ 1680352 (+)

Expression


Co-expression Network