G336243


Basic Information

Item Value
gene id G336243
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1015972 ~ 1016631 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398178
CTGAGAGTACTGGGAGTACTGAGTGTACTGGGTATACTGGGAGCACTGGGTGTACTGGGTATACTGAGCGTACTGGGAGTACTGAGCGTACTGGGAGTACTGGGTGTACTGGGAGTACTGAGTGTACTGGGAGTACTGAGTGTACTGGGTATACTGGGAGTACTGAGAGTACTCAGAGTATTGAAAGCAATGAGAGCACTGAGTGTACTGAGAGTAATAGTAATGAGAGATGAGCGTCATGATGCTATCCCACGGTGATATTAATAATACCATCGTATTACCCGACACTAcagtctgcacacacacttctactgcaCAAGCAGGAAAAAAACGATTCAGAGACGGAAATGAAACGAGGAAGAGGAACAGAAAAATACCCCACATCTAGACCGCATTAAAAAACCAGACATTACATTACAATGTTCAgatattataataacaataataataataataatagtaataataattgtaaattatttgtttataatcaGAGTTAAAATGCTTAATCATCAGCCATGTCCATTATACATCATACCTTATTATTAAAATCTGTCTAATTTTCCTCCTCAGTGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398178 True 579 lncRNA 0.39 2 1015972 1016631

Neighbor

gene id symbol gene type direction distance location
LOC117595860 NA coding upstream 64589 949475 ~ 951383 (+)
LOC113529000 NA coding upstream 65854 910572 ~ 950118 (+)
utp18 utp18 coding upstream 109202 893766 ~ 906770 (+)
si:dkey-89b17.4 LOC108257022,LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC107727719,LOC107665149 coding upstream 198729 806305 ~ 817243 (+)
LOC113528988 LOC108257047 coding upstream 304463 706407 ~ 711509 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding downstream 7847 1024478 ~ 1033504 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644 coding downstream 22334 1038965 ~ 1063015 (+)
LOC113529039 LOC108257110,LOC105013290 coding downstream 49136 1065767 ~ 1076546 (+)
LOC113529037 samd14 coding downstream 64363 1080994 ~ 1103079 (+)
gabpb2a LOC108257329 coding downstream 120446 1137077 ~ 1147087 (+)
G336241 LOC108257176 non-coding upstream 7879 1006232 ~ 1008093 (+)
G336202 NA non-coding upstream 109080 889818 ~ 906892 (+)
G336209 NA non-coding upstream 109484 905239 ~ 906488 (+)
LOC113528997 NA non-coding upstream 236946 775875 ~ 779026 (+)
G336167 NA non-coding upstream 243144 768195 ~ 772828 (+)
G336214 NA non-coding downstream 3608 1020239 ~ 1064155 (+)
G336246 NA non-coding downstream 11425 1028056 ~ 1127409 (+)
G336245 sf3b4,LOC102792253 non-coding downstream 101012 1117643 ~ 1152914 (+)
G336295 psmd3,LOC107703632,LOC107573823,LOC107757733,LOC107570970 non-coding downstream 105636 1122267 ~ 1123573 (+)
G336302 NA non-coding downstream 143024 1159655 ~ 1159970 (+)
G336213 NA other upstream 39651 973669 ~ 976321 (+)
G336172 NA other upstream 221277 794117 ~ 794695 (+)
G336161 LOC108257052 other upstream 266298 739369 ~ 749674 (+)
G336034 NA other upstream 728757 286849 ~ 287215 (+)
mllt11 mllt11 other downstream 116324 1132955 ~ 1136124 (+)
G336334 NA other downstream 253178 1269809 ~ 1335574 (+)
G336350 cdk12 other downstream 309185 1325816 ~ 1327507 (+)
G336433 parp10 other downstream 640686 1657317 ~ 1659459 (+)
polr2k NA other downstream 658409 1675040 ~ 1680352 (+)

Expression


Co-expression Network