G336261


Basic Information

Item Value
gene id G336261
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1756185 ~ 1757404 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398210
CCGGGAGAcgtttttgtttgtctttgtcattttctttatttggcTGAAATGAACCCGTCCCACATCATTAACGCTAACAGTGACACTAACACGCTGTCGTGTGGTACAGAAACACGGCTGGAACTAACGCAGGAGATGTTCATTTACCCTGATTAACTGAcctgagccacacacacacacacacacacacacaccggagaCAACGACGACGACGACGAAGACGACAACACGGCACACTGACGTAGAGAAAACCCTCAACAGTAGCGCGGAAAGAACGGCGTTAGAGTCGGACGCCGGAGCGCGTGACGCCGCTTTCTCCGACGTTCCCGAGAAAAAAGATGAATCTAAACAAACATTCGTGCGATTTCACAACAAATCCAACACGGGGTGCGTTTCCGAATTTGAGAAGAAATTGAATGCAGACGTTTACCTCAGGCTTTCAAATCTGATCgctaatttaacaaataataaagCTACACGTTTCACCTCCACAGATCAACACTTATCCGTCACTAAAAACTCGTTCTCACGGTAAACTGACGCCTGAGAgacacctttttctttttctttttttttttaagtcaagctaccaaaacagaataaaaaaaaaaaaaaaaaaccCAAGAGTCACCTCAGCTCGCTTcacttaaaactgaaaaatcaCAAACGTTCTGATGAAGTGGTCGAGTTTTTGGCGTTCACACGCGGACGGGTGTGTGCCGATCACCAGATATTCCAAGATAATAATCTGATCATCGCACTTAGAAAATATCGTCTGTAAATtgttaaatacaataatatcaTGAACCACAATAAAAAGTTTGGCGATTATCACAATACAGGGATTTAATATCGATATATCGGTTCAGACTGGAGTCCGATTTCAGTCTGAACCTCAAAGCAAactgtctctccgtctctctctctcacacacacacacacacacacacacacacacacacacacacacacaccccgaaaCAACGTTTACATGTAGGTataaagcgcacacacacacacacacacacacacacacacacacacacacacacgcgtgtccagtttattaaaaatgatccCTCCCTCTAGTTTGTGCCCCGAGCAATTACCAGATCTCCAGATCAACCCCAcccttctacacacacacacacacacacacacacacacacacacacacacacacacacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398210 True 1189 lncRNA 0.44 2 1756185 1757404

Neighbor

gene id symbol gene type direction distance location
spag1a spag1,spag1a,LOC108438857,LOC107748364 coding upstream 54454 1683334 ~ 1701731 (+)
adck5 adck5 coding upstream 126189 1610614 ~ 1629996 (+)
lix1l lix1l,LOC107693252 coding upstream 147331 1596847 ~ 1608854 (+)
prcc prcc coding upstream 169723 1578998 ~ 1586462 (+)
mrpl24 mrpl24,LOC107559719,LOC107693309,LOC107669969 coding upstream 178029 1574337 ~ 1578156 (+)
grhl2b grhl2,grhl2b,LOC107748368,LOC107672862,LOC107550099,LOC107552317,LOC107738316,LOC107698657 coding downstream 47266 1804670 ~ 1842048 (+)
psmg2 psmg2 coding downstream 126041 1883445 ~ 1891699 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding downstream 163531 1920935 ~ 1932700 (+)
rnmt rnmt,LOC107746930 coding downstream 234410 1991814 ~ 2003334 (+)
mc5ra mc5ra,LOC108257298,LOC108438868,LOC103022384,LOC107746932,LOC107552309 coding downstream 269003 2026407 ~ 2039047 (+)
G336256 pabpc1,LOC107672855 non-coding upstream 15178 1738163 ~ 1741007 (+)
G336275 NA non-coding upstream 167891 1586247 ~ 1588294 (+)
G336406 NA non-coding upstream 175885 1579795 ~ 1580300 (+)
G336267 NA non-coding upstream 204985 1549855 ~ 1551200 (+)
G336391 NA non-coding upstream 206955 1548991 ~ 1549230 (+)
G336481 NA non-coding downstream 63728 1821132 ~ 1842536 (+)
G336482 NA non-coding downstream 85185 1842589 ~ 1842970 (+)
G336849 fam210a,LOC107675659,LOC107754921,LOC107566562,LOC107668710 non-coding downstream 208572 1965976 ~ 1984496 (+)
LOC117595895 NA non-coding downstream 444376 2201780 ~ 2203741 (+)
LOC117595896 NA non-coding downstream 484781 2242185 ~ 2259536 (+)
polr2k NA other upstream 75833 1675040 ~ 1680352 (+)
G336433 parp10 other upstream 96726 1657317 ~ 1659459 (+)
G336334 NA other upstream 420611 1269809 ~ 1335574 (+)
G336350 cdk12 other upstream 428678 1325816 ~ 1327507 (+)
mllt11 mllt11 other upstream 620061 1132955 ~ 1136124 (+)
G336822 ldlrad4 other downstream 118870 1876274 ~ 1945866 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 428488 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 544741 2302145 ~ 2340261 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other downstream 600712 2358116 ~ 2392537 (+)
rsad1 rsad1 other downstream 2550518 4307922 ~ 4325036 (+)

Expression


Co-expression Network