G336275


Basic Information

Item Value
gene id G336275
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1586247 ~ 1588294 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398224
tggtgtgtgtgtgtgtgtgtgtgttaataaAATACTGAATGATGGTGTAGTATTAGAATTACTGCaccagctgcactactgtcagagctgctgttatggaaaattaatcaacatctaaATAAATTTCATGTGTCCATTAAAGCTACtacaaatgttttataaagCATCTATATGCAGGAGAACTGAAGTGTTACGTAGCAAGAGTTAATTTGGTCTGTAaagttgaacattttatttgtcaGTAAAGCACAGACGCTATACAGGAGAAAACACAGAGTTAACAGAATTCAGGTGAAagcaggtcaaaggtcagactGTGACTCGGATCGTTATTCCGACTCTGTTTCCGGTTTGTTTTCCGCTGcagctgctgcttctgcttctAGTTTCATCAGTTTCTTCTTCCTCGGATCCACATACGGCCCTACAGACAGCAGCACTCGCACCGTGTCCAAACCGTTcacctgcacgcacacacacgcacgcgcacacacacatcaggagaTCATCAgaactatatacacacacacacacacactcagcagatcatcacaactatacacacacacacacacacacatcaggagaTCAtcagaactacacacacacacacacactcagcagatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398224 True 628 lncRNA 0.43 2 1586247 1588294

Neighbor

gene id symbol gene type direction distance location
mrpl24 mrpl24,LOC107559719,LOC107693309,LOC107669969 coding upstream 8091 1574337 ~ 1578156 (+)
mindy1 fam63a,LOC107693308,LOC107559718,LOC107669987,LOC106569905 coding upstream 41716 1530514 ~ 1544531 (+)
LOC113546241 LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289,LOC108257310,LOC108280069,LOC108257281 coding upstream 64497 1444104 ~ 1521750 (+)
LOC113546297 LOC108257310,LOC108257281,LOC108257282,LOC108257326,LOC108257289,LOC108257286,LOC108257284 coding upstream 95020 1471050 ~ 1491227 (+)
LOC113546243 LOC108257322 coding upstream 148825 1427985 ~ 1437422 (+)
lix1l lix1l,LOC107693252 coding downstream 8553 1596847 ~ 1608854 (+)
adck5 adck5 coding downstream 22320 1610614 ~ 1629996 (+)
spag1a spag1,spag1a,LOC108438857,LOC107748364 coding downstream 95040 1683334 ~ 1701731 (+)
grhl2b grhl2,grhl2b,LOC107748368,LOC107672862,LOC107550099,LOC107552317,LOC107738316,LOC107698657 coding downstream 216376 1804670 ~ 1842048 (+)
psmg2 psmg2 coding downstream 295151 1883445 ~ 1891699 (+)
G336406 NA non-coding upstream 5947 1579795 ~ 1580300 (+)
G336267 NA non-coding upstream 35047 1549855 ~ 1551200 (+)
G336391 NA non-coding upstream 37017 1548991 ~ 1549230 (+)
G336283 NA non-coding upstream 37355 1548665 ~ 1548892 (+)
LOC117595828 NA non-coding upstream 87226 1494315 ~ 1499021 (+)
G336256 pabpc1,LOC107672855 non-coding downstream 149869 1738163 ~ 1741007 (+)
G336261 NA non-coding downstream 167891 1756185 ~ 1757404 (+)
G336481 NA non-coding downstream 232838 1821132 ~ 1842536 (+)
G336482 NA non-coding downstream 254295 1842589 ~ 1842970 (+)
G336849 fam210a,LOC107675659,LOC107754921,LOC107566562,LOC107668710 non-coding downstream 377682 1965976 ~ 1984496 (+)
G336334 NA other upstream 250673 1269809 ~ 1335574 (+)
G336350 cdk12 other upstream 258740 1325816 ~ 1327507 (+)
mllt11 mllt11 other upstream 450123 1132955 ~ 1136124 (+)
G336213 NA other upstream 609926 973669 ~ 976321 (+)
G336172 NA other upstream 791552 794117 ~ 794695 (+)
G336433 parp10 other downstream 69023 1657317 ~ 1659459 (+)
polr2k NA other downstream 86746 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 287980 1876274 ~ 1945866 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 597598 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 713851 2302145 ~ 2340261 (+)

Expression


Co-expression Network