mllt11 (mllt11)


Basic Information

Item Value
gene id mllt11
gene name mllt11
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1132955 ~ 1136124 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398245
TGTGACAGGGTGTGACTGAATCCGGCAGAAAAAAAGCACCATCGCGCATTTTAATACCACATTTCTCACCGACAGCAGGTTAAAAAGCCTCCAAATCACCAACAAAGATTAAAATGTTGGACGTGACGAGCAGCCAGTTCGACTCGTTCCTGTTCTGGAGGCAGCCCATCGCCGCCCTGGACCTGTCCGAGCTCGAGGACCTGGGACTCGCCGAGCCGAAATCCAAGGACGGGTCTTTGGCCggaaaaatggggaaaagtTCTCCCAAGCTGGACGAACACGATGACGACCTGGAGCTGTCCGAGTTCTCCACCTTCAACTACTGGAAGGAGCCGATCGCCAGCATCGACATGCTGGACTtcagcctgctgctgctgtgaagCCCCGCCCCCCGACACCACCACAGCCCCGCCCCCCGACACCGCCACAGCCCTGCCCCCTGACACCACCACAGCCCTGCCCCATGCTCTCAGCCCCGCCCCTGACACCTCAACCACGCCCCCACATTACCAGCCCCGCCCCTGCCACACTCACAGCTCCGCCCCCACATTCTCAGCCCCGCCCCTGACACCATAGCCTTGCCTTCATAGTCTCAGCCCCGCCCCCACGCTCTCAACTCCGCCCCTGACATTCTCGGTCCCGCCCCCACGCTCTCAGCCCCGCCCCTGACACTCTTGGCCCCGCCCCCACGCTCTTAGCCCCGCCTCCTGATTATTACAGCGGTTTTCTTTGTCTGTAAATCGTGTTTTCTGTCCTGACGCAGCGCTGACACACATCAGTCTCGAGTGTTAaattaaagaaagtaaatgtaaattattgatGGAGATGAAAGTGTAAAAAGTGTAAAGTCTCAGCCTGAGCATCATCTCGTACCGCAGGTCACGTTCACAGCCGCTGTTAGCTGTAAAGCGTATTATTATTCCACTCCTCAGTGTTTCAGTCCTGCCTGATGATTTATCATAATCTCTTTTATTAAACGTGACGCAGTGGAATGTGAATAAAGGACAG
>TU398246
TGTGACAGGGTGTGACTGAATCCGGCAGAAAAAAAGCACCATCGCGCATTTTAATACCACATTTCTCACCGACAGCAGGTTAAAAAGCCTCCAAATCACCAACAAAGATTAAAATGTTGGACGTGACGAGCAGCCAGTTCGACTCGTTCCTGTTCTGGAGGCAGCCCATCGCCGCCCTGGACCTGTCCGAGCTCGAGGACCTGGGACTCGCCGAGCCGAAATCCAAGGACGGGTCTTTGGCCggaaaaatggggaaaagtTCTCCCAAGCTGGACGAACACGATGACGACCTGGAGCTGTCCGAGTTCTCCACCTTCAACTACTGGAAGGAGCCGATCGCCAGCATCGACATGCTGGACTtcagcctgctgctgctgtgaAGCCCCGCCCCCCGACACCGCCACAGCCCTGCCCCCTGACACCACCACAGCCCTGCCCCATGCTCTCAGCCCCGCCCCTGACACCTCAACCACGCCCCCACATTACCAGCCCCGCCCCTGCCACACTCACAGCTCCGCCCCCACATTCTCAGCCCCGCCCCTGACACCATAGCCTTGCCTTCATAGTCTCAGCCCCGCCCCCACGCTCTCAACTCCGCCCCTGACATTCTCGGTCCCGCCCCCACGCTCTCAGCCCCGCCCCTGACACTCTTGGCCCCGCCCCCACGCTCTTAGCCCCGCCTCCTGATTATTACAGCGGTTTTCTTTGTCTGTAAATCGTGTTTTCTGTCCTGACGCAGCGCTGACACACATCAGTCTCGAGTGTTAaattaaagaaagtaaatgtaaattattgatGGAGATGAAAGTGTAAAAAGTGTAAAGTCTCAGCCTGAGCATCATCTCGTACCGCAGGTCACGTTCACAGCCGCTGTTAGCTGTAAAGCGTATTATTATTCCACTCCTCAGTGTTTCAGTCCTGCCTGATGATTTATCATAATCTCTTTTATTAAACGTGACGCAGTGGAATGTGAATAAAGGACAG
>XM_034298623.1
TGCGCTAGTATGCAGGTGGTATAAAGGGGGCTGTGTGACAGGGTGTGACTGAATCCGGCAGAAAAAAAGCACCATCGCGCATTTTAATACCACATTTCTCACCGACAGCAGGTTAAAAAGCCTCCAAATCACCAACAAAGATTAAAATGTTGGACGTGACGAGCAGCCAGTTCGACTCGTTCCTGTTCTGGAGGCAGCCCATCGCCGCCCTGGACCTGTCCGAGCTCGAGGACCTGGGACTCGCCGAGCCGAAATCCAAGGACGGGTCTTTGGCCggaaaaatggggaaaagtTCTCCCAAGCTGGACGAACACGATGACGACCTGGAGCTGTCCGAGTTCTCCACCTTCAACTACTGGAAGGAGCCGATCGCCAGCATCGACATGCTGGACTtcagcctgctgctgctgtgaagCCCCGCCCCCCGACACCACCACAGCCCCGCCCCCCGACACCGCCACAGCCCTGCCCCCTGACACCACCACAGCCCTGCCCCATGCTCTCAGCCCCGCCCCTGACACCTCAACCACGCCCCCACATTACCAGCCCCGCCCCTGCCACACTCACAGCTCCGCCCCCACATTCTCAGCCCCGCCCCTGACACCATAGCCTTGCCTTCATAGTCTCAGCCCCGCCCCCACGCTCTCAACTCCGCCCCTGACATTCTCGGTCCCGCCCCCACGCTCTCAGCCCCGCCCCTGACACTCTTGGCCCCGCCCCCACGCTCTTAGCCCCGCCTCCTGATTATTACAGCGGTTTTCTTTGTCTGTAAATCGTGTTTTCTGTCCTGACGCAGCGCTGACACACATCAGTCTCGAGTGTTAaattaaagaaagtaaatgtaaattattgatGGAGATGAAAGTGTAAAAAGTGTAAAGTCTCAGCCTGAGCATCATCTCGTACCGCAGGTCACGTTCACAGCCGCTGTTAGCTGTAAAGCGTATTATTATTCCACTCCTCAGTGTTTCAGTCCTGCCTGATGATTTATCATAATCTCTTTTATTAAACGTGACGCAGTGGAATGTGAATAAAGGACAGAAGTGTTTTCTCACTGA

Function

symbol description
mllt11 Predicted to be located in microtubule organizing center. Is expressed in cranial ganglion; neurons; retina; retinal ganglion cell layer; and trigeminal placode. Orthologous to human MLLT11 (MLLT11 transcription factor 7 cofactor).

NR:

description
PREDICTED: protein AF1q isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398245 False 1008 TUCP 0.55 2 1132988 1136107
TU398246 False 984 lncRNA 0.55 3 1132988 1136107
XM_034298623.1 True 1058 mRNA 0.55 2 1132955 1136124

Neighbor

gene id symbol gene type direction distance location
LOC113529037 samd14 coding upstream 29876 1080994 ~ 1103079 (+)
LOC113529039 LOC108257110,LOC105013290 coding upstream 56409 1065767 ~ 1076546 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644 coding upstream 69940 1038965 ~ 1063015 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding upstream 99451 1024478 ~ 1033504 (+)
LOC117595860 NA coding upstream 181572 949475 ~ 951383 (+)
gabpb2a LOC108257329 coding downstream 953 1137077 ~ 1147087 (+)
rab25a rab25a,LOC108257330,LOC108442629,LOC107669986,LOC107693307,LOC107753478 coding downstream 24609 1160733 ~ 1169288 (+)
fbxl20 fbxl20,LOC107727724,LOC107665129,LOC107666314,LOC107549884,LOC107563017 coding downstream 221886 1358010 ~ 1376292 (+)
LOC113546245 NA coding downstream 243529 1379653 ~ 1387764 (+)
LOC113546318 LOC108257321 coding downstream 270141 1406265 ~ 1426607 (+)
G336246 NA non-coding upstream 5546 1028056 ~ 1127409 (+)
G336295 psmd3,LOC107703632,LOC107573823,LOC107757733,LOC107570970 non-coding upstream 9382 1122267 ~ 1123573 (+)
G336214 NA non-coding upstream 68800 1020239 ~ 1064155 (+)
G336243 NA non-coding upstream 116324 1015972 ~ 1016631 (+)
G336241 LOC108257176 non-coding upstream 124862 1006232 ~ 1008093 (+)
G336302 NA non-coding downstream 23531 1159655 ~ 1159970 (+)
G336313 NA non-coding downstream 47444 1183568 ~ 1187725 (+)
G336319 NA non-coding downstream 56563 1192687 ~ 1193174 (+)
G336337 NA non-coding downstream 171197 1307321 ~ 1308087 (+)
G336349 NA non-coding downstream 184691 1320815 ~ 1335907 (+)
G336213 NA other upstream 156634 973669 ~ 976321 (+)
G336172 NA other upstream 338260 794117 ~ 794695 (+)
G336161 LOC108257052 other upstream 383281 739369 ~ 749674 (+)
G336034 NA other upstream 845740 286849 ~ 287215 (+)
G336334 NA other downstream 133685 1269809 ~ 1335574 (+)
G336350 cdk12 other downstream 189692 1325816 ~ 1327507 (+)
G336433 parp10 other downstream 521193 1657317 ~ 1659459 (+)
polr2k NA other downstream 538916 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 740150 1876274 ~ 1945866 (+)

Expression


Co-expression Network