G336302


Basic Information

Item Value
gene id G336302
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1159655 ~ 1159970 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398253
ctttcatctcagaaatattgctaaaataagaaatatattgtcactacacgatgcagaaaaattagttcatgcttttgttacctctaggttggattattgtaatgccttactgtctggatgttccagtaggagcataaacaagctccagttagtccagaatgcagcagcgagagtccttactagaaccagaagatatgaccacatcacccctatcttatccacactgcattggctcccaatcacatttcgtattgattataaaatactactattgacctataaagcactaaatggtctcgcgccacagtacctgagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398253 True 316 lncRNA 0.39 1 1159655 1159970

Neighbor

gene id symbol gene type direction distance location
gabpb2a LOC108257329 coding upstream 12568 1137077 ~ 1147087 (+)
LOC113529037 samd14 coding upstream 56576 1080994 ~ 1103079 (+)
LOC113529039 LOC108257110,LOC105013290 coding upstream 83109 1065767 ~ 1076546 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644 coding upstream 96640 1038965 ~ 1063015 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding upstream 126151 1024478 ~ 1033504 (+)
rab25a rab25a,LOC108257330,LOC108442629,LOC107669986,LOC107693307,LOC107753478 coding downstream 763 1160733 ~ 1169288 (+)
fbxl20 fbxl20,LOC107727724,LOC107665129,LOC107666314,LOC107549884,LOC107563017 coding downstream 198040 1358010 ~ 1376292 (+)
LOC113546245 NA coding downstream 219683 1379653 ~ 1387764 (+)
LOC113546318 LOC108257321 coding downstream 246295 1406265 ~ 1426607 (+)
LOC113546243 LOC108257322 coding downstream 268015 1427985 ~ 1437422 (+)
G336245 sf3b4,LOC102792253 non-coding upstream 6741 1117643 ~ 1152914 (+)
G336246 NA non-coding upstream 32246 1028056 ~ 1127409 (+)
G336295 psmd3,LOC107703632,LOC107573823,LOC107757733,LOC107570970 non-coding upstream 36082 1122267 ~ 1123573 (+)
G336214 NA non-coding upstream 95500 1020239 ~ 1064155 (+)
G336243 NA non-coding upstream 143024 1015972 ~ 1016631 (+)
G336313 NA non-coding downstream 23598 1183568 ~ 1187725 (+)
G336319 NA non-coding downstream 32717 1192687 ~ 1193174 (+)
G336337 NA non-coding downstream 147351 1307321 ~ 1308087 (+)
G336349 NA non-coding downstream 160845 1320815 ~ 1335907 (+)
G336364 NA non-coding downstream 197354 1357324 ~ 1357589 (+)
mllt11 mllt11 other upstream 23531 1132955 ~ 1136124 (+)
G336213 NA other upstream 183334 973669 ~ 976321 (+)
G336172 NA other upstream 364960 794117 ~ 794695 (+)
G336161 LOC108257052 other upstream 409981 739369 ~ 749674 (+)
G336034 NA other upstream 872440 286849 ~ 287215 (+)
G336334 NA other downstream 109839 1269809 ~ 1335574 (+)
G336350 cdk12 other downstream 165846 1325816 ~ 1327507 (+)
G336433 parp10 other downstream 497347 1657317 ~ 1659459 (+)
polr2k NA other downstream 515070 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 716304 1876274 ~ 1945866 (+)

Expression


Co-expression Network