G336313


Basic Information

Item Value
gene id G336313
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1183568 ~ 1187725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398269
acGTAGCGAGGGTGaggggttgtgattaatctgattacgggGCGTAGCGAGGGTGagggggttgtgattaatctgattaccGGACGTAGCGAGGGTGAGggggttgtgattaatctgattacgggACGTAGCGAGGGTGAGggggttgtgattaatctgattacgggACGTAGCGAGGGTGAGggggttgtgattaatctgattacgggACGTAGCGAGGGTGAGggggttgtgattaatctgattacgggACGTAGCGAGGGTGAGggggttgtgattaatctgattaccGGACGTAGCGAGGGTGAGGGGGTTTGGAGCCGTGAACAGTCGACATTCCAGCGGAAACGTAGCAATCTTGTTTCCTCTCCACTCTGCGCACATTCACAAAATC
>TU398271
atctgattacgggACGTAGCGAGGGTGAGggggttgtgattaatctgattacgggACGTAGCGAGGGTGagggggttgtgattaatctgattaccGGACGTAGCGAGGGTGAGggggttgtgattaatctgattaccGGACGTAGCGAGGGTGAGGGGGTTTGGAGCCGTGAACAGTCGACATTCCAGCGGAAACGTAGCAATCTTGTTTCCTCTCCACTCTGCGCACATTCACAAAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398269 True 394 lncRNA 0.53 4 1183568 1187725
TU398271 False 240 lncRNA 0.52 2 1184283 1187725

Neighbor

gene id symbol gene type direction distance location
rab25a rab25a,LOC108257330,LOC108442629,LOC107669986,LOC107693307,LOC107753478 coding upstream 14280 1160733 ~ 1169288 (+)
gabpb2a LOC108257329 coding upstream 36481 1137077 ~ 1147087 (+)
LOC113529037 samd14 coding upstream 80489 1080994 ~ 1103079 (+)
LOC113529039 LOC108257110,LOC105013290 coding upstream 107022 1065767 ~ 1076546 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644 coding upstream 120553 1038965 ~ 1063015 (+)
fbxl20 fbxl20,LOC107727724,LOC107665129,LOC107666314,LOC107549884,LOC107563017 coding downstream 170285 1358010 ~ 1376292 (+)
LOC113546245 NA coding downstream 191928 1379653 ~ 1387764 (+)
LOC113546318 LOC108257321 coding downstream 218540 1406265 ~ 1426607 (+)
LOC113546243 LOC108257322 coding downstream 240260 1427985 ~ 1437422 (+)
LOC113546241 LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289,LOC108257310,LOC108280069,LOC108257281 coding downstream 256379 1444104 ~ 1521750 (+)
G336302 NA non-coding upstream 23598 1159655 ~ 1159970 (+)
G336245 sf3b4,LOC102792253 non-coding upstream 30654 1117643 ~ 1152914 (+)
G336246 NA non-coding upstream 56159 1028056 ~ 1127409 (+)
G336295 psmd3,LOC107703632,LOC107573823,LOC107757733,LOC107570970 non-coding upstream 59995 1122267 ~ 1123573 (+)
G336214 NA non-coding upstream 119413 1020239 ~ 1064155 (+)
G336319 NA non-coding downstream 4962 1192687 ~ 1193174 (+)
G336337 NA non-coding downstream 119596 1307321 ~ 1308087 (+)
G336349 NA non-coding downstream 133090 1320815 ~ 1335907 (+)
G336364 NA non-coding downstream 169599 1357324 ~ 1357589 (+)
LOC117595828 NA non-coding downstream 306590 1494315 ~ 1499021 (+)
mllt11 mllt11 other upstream 47444 1132955 ~ 1136124 (+)
G336213 NA other upstream 207247 973669 ~ 976321 (+)
G336172 NA other upstream 388873 794117 ~ 794695 (+)
G336161 LOC108257052 other upstream 433894 739369 ~ 749674 (+)
G336034 NA other upstream 896353 286849 ~ 287215 (+)
G336334 NA other downstream 82084 1269809 ~ 1335574 (+)
G336350 cdk12 other downstream 138091 1325816 ~ 1327507 (+)
G336433 parp10 other downstream 469592 1657317 ~ 1659459 (+)
polr2k NA other downstream 487315 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 688549 1876274 ~ 1945866 (+)

Expression


Co-expression Network