G336349


Basic Information

Item Value
gene id G336349
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1320815 ~ 1335907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398321
ggtgtcaccCACCATCTCCACCTGGCGGGGGTCGAGCTGCGTCGGGGCTGTAGAGGGAACGGAGAAGTggatcttcttcttctcttttgcTTCCTCATGAGCATCTGACGCCTCCATcatcctccacacacacacacacacacacttatacacacacacacacacacacacacacacacacggtttatACGGTATATCCAGAAAATCGTCCTCCGTGGTCAaatgctacacacacatacacacacactgtggtgcAGAGTCCACTTTCTAAacctctctctctgagtgacAGTCTCTCGTCCTCTCTCGATCTCCacaacagaaacacaacacagcCCTGAGACTGAAAAcgaaaaagagtgtgtgagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagatacacacccgtgaggtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagatacacaccgtgaggtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU398321 True 573 lncRNA 0.50 2 1320815 1335907

Neighbor

gene id symbol gene type direction distance location
rab25a rab25a,LOC108257330,LOC108442629,LOC107669986,LOC107693307,LOC107753478 coding upstream 151527 1160733 ~ 1169288 (+)
gabpb2a LOC108257329 coding upstream 173728 1137077 ~ 1147087 (+)
LOC113529037 samd14 coding upstream 217736 1080994 ~ 1103079 (+)
LOC113529039 LOC108257110,LOC105013290 coding upstream 244269 1065767 ~ 1076546 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644 coding upstream 257800 1038965 ~ 1063015 (+)
fbxl20 fbxl20,LOC107727724,LOC107665129,LOC107666314,LOC107549884,LOC107563017 coding downstream 22103 1358010 ~ 1376292 (+)
LOC113546245 NA coding downstream 43746 1379653 ~ 1387764 (+)
LOC113546318 LOC108257321 coding downstream 70358 1406265 ~ 1426607 (+)
LOC113546243 LOC108257322 coding downstream 92078 1427985 ~ 1437422 (+)
LOC113546241 LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289,LOC108257310,LOC108280069,LOC108257281 coding downstream 108197 1444104 ~ 1521750 (+)
G336337 NA non-coding upstream 12728 1307321 ~ 1308087 (+)
G336319 NA non-coding upstream 127641 1192687 ~ 1193174 (+)
G336313 NA non-coding upstream 133090 1183568 ~ 1187725 (+)
G336302 NA non-coding upstream 160845 1159655 ~ 1159970 (+)
G336245 sf3b4,LOC102792253 non-coding upstream 167901 1117643 ~ 1152914 (+)
G336364 NA non-coding downstream 21417 1357324 ~ 1357589 (+)
LOC117595828 NA non-coding downstream 158408 1494315 ~ 1499021 (+)
G336283 NA non-coding downstream 212758 1548665 ~ 1548892 (+)
G336391 NA non-coding downstream 213084 1548991 ~ 1549230 (+)
G336267 NA non-coding downstream 213948 1549855 ~ 1551200 (+)
mllt11 mllt11 other upstream 184691 1132955 ~ 1136124 (+)
G336213 NA other upstream 344494 973669 ~ 976321 (+)
G336172 NA other upstream 526120 794117 ~ 794695 (+)
G336161 LOC108257052 other upstream 571141 739369 ~ 749674 (+)
G336034 NA other upstream 1033600 286849 ~ 287215 (+)
G336433 parp10 other downstream 321410 1657317 ~ 1659459 (+)
polr2k NA other downstream 339133 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 540367 1876274 ~ 1945866 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 849985 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 966238 2302145 ~ 2340261 (+)

Expression


Co-expression Network