polr2k


Basic Information

Item Value
gene id polr2k
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1675040 ~ 1680352 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU398446
GCGCGCATGCGCAGAACGTTCTGGTTCagcagtgcgcatgcgcaaatAACAGCGCGGACCTAACGCACGTTTGTTGGTGAAATGGATTCCCAGAAGGACATGCAGCCTCCTAAACAGCAGCCCATGATCTACATCTGTGGAGAGTGTCACACAGAAAATGAGATCAAGGCCAGAGACCCGATCCGCTGCAGAGAGTGCGGCTACAGAATCATGTACAAGAAGAGGACGAAGAGACTGGTCGTGTTCGACGCCCGATGAACTCCAACCCAACAGATTTTCCTGCTCCGAGCTGAAAccctttagtttttttttgttttttttctccattttagtTTGAAATTGTAAATAAGTGTTTGTA
>XM_026946070.2
AGAGCTCTCTTTGAACAGCGCGCATGCGCAGAACGTTCTGGTTCagcagtgcgcatgcgcaaatAACAGCGCGGACCTAACGCACGTTTGTTGGTGAAATGGATTCCCAGAAGGACATGCAGCCTCCTAAACAGCAGCCCATGATCTACATCTGTGGAGAGTGTCACACAGAAAATGAGATCAAGGCCAGAGACCCGATCCGCTGCAGAGAGTGCGGCTACAGAATCATGTACAAGAAGAGGACGAAGAGACTGGTCGTGTTCGACGCCCGATGAACTCCAACCCAACAGATTTTCCTGCTCCGAGCTGAAAccctttagtttttttttgttttttttctccattttagtTTGAAATTGTAAATAAGTGTTTGTAGAAGTTAAATTTTCAAATACagttttgtgttaaaaaataaataaaagctgagtCAT

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03009 RPB12, POLR2K; DNA-directed RNA polymerases I, II, and III subunit RPABC4

RNA

RNA id representative length rna type GC content exon number start site end site
TU398446 False 358 lncRNA 0.47 4 1675057 1680296
XM_026946070.2 True 431 mRNA 0.44 4 1675040 1680352

Neighbor

gene id symbol gene type direction distance location
adck5 adck5 coding upstream 45044 1610614 ~ 1629996 (+)
lix1l lix1l,LOC107693252 coding upstream 66186 1596847 ~ 1608854 (+)
prcc prcc coding upstream 88578 1578998 ~ 1586462 (+)
mrpl24 mrpl24,LOC107559719,LOC107693309,LOC107669969 coding upstream 96884 1574337 ~ 1578156 (+)
mindy1 fam63a,LOC107693308,LOC107559718,LOC107669987,LOC106569905 coding upstream 130509 1530514 ~ 1544531 (+)
spag1a spag1,spag1a,LOC108438857,LOC107748364 coding downstream 2982 1683334 ~ 1701731 (+)
grhl2b grhl2,grhl2b,LOC107748368,LOC107672862,LOC107550099,LOC107552317,LOC107738316,LOC107698657 coding downstream 124318 1804670 ~ 1842048 (+)
psmg2 psmg2 coding downstream 203093 1883445 ~ 1891699 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding downstream 240583 1920935 ~ 1932700 (+)
rnmt rnmt,LOC107746930 coding downstream 311462 1991814 ~ 2003334 (+)
G336275 NA non-coding upstream 86746 1586247 ~ 1588294 (+)
G336406 NA non-coding upstream 94740 1579795 ~ 1580300 (+)
G336267 NA non-coding upstream 123840 1549855 ~ 1551200 (+)
G336391 NA non-coding upstream 125810 1548991 ~ 1549230 (+)
G336283 NA non-coding upstream 126148 1548665 ~ 1548892 (+)
G336256 pabpc1,LOC107672855 non-coding downstream 57811 1738163 ~ 1741007 (+)
G336261 NA non-coding downstream 75833 1756185 ~ 1757404 (+)
G336481 NA non-coding downstream 140780 1821132 ~ 1842536 (+)
G336482 NA non-coding downstream 162237 1842589 ~ 1842970 (+)
G336849 fam210a,LOC107675659,LOC107754921,LOC107566562,LOC107668710 non-coding downstream 285624 1965976 ~ 1984496 (+)
G336433 parp10 other upstream 15581 1657317 ~ 1659459 (+)
G336334 NA other upstream 339466 1269809 ~ 1335574 (+)
G336350 cdk12 other upstream 347533 1325816 ~ 1327507 (+)
mllt11 mllt11 other upstream 538916 1132955 ~ 1136124 (+)
G336213 NA other upstream 698719 973669 ~ 976321 (+)
G336822 ldlrad4 other downstream 195922 1876274 ~ 1945866 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other downstream 505540 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other downstream 621793 2302145 ~ 2340261 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other downstream 677764 2358116 ~ 2392537 (+)
rsad1 rsad1 other downstream 2627570 4307922 ~ 4325036 (+)

Expression


Co-expression Network