G337075


Basic Information

Item Value
gene id G337075
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2584051 ~ 2585796 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU399294
TGAAAAACCACGTAGCGGTCACataaactcttcaccctcctgtgGTCTggaagcattcgggcctcacggccagactgtgcagcagtttcttcccccaagccatcagactcctcagcACTCAGGGtctggactgaaaacacacacacatacacacatacacactcagctGAGCATCaccccatcctctttgcaatatTTGCACACACCTGCATTCAAATTTCtgctgctataaatatttattatatactgatatatattatatatctccCCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399294 True 273 lncRNA 0.45 2 2584051 2585796

Neighbor

gene id symbol gene type direction distance location
LOC117595863 NA coding upstream 16011 2566692 ~ 2568040 (+)
ifnphi3 LOC108256834 coding upstream 27222 2554657 ~ 2556829 (+)
rdm1 rdm1 coding upstream 32978 2541482 ~ 2551073 (+)
LOC117595862 rdm1 coding upstream 130755 2448216 ~ 2453296 (+)
LOC113546299 LOC108257284,LOC108257282,LOC108257326,LOC108257286,LOC108257289 coding upstream 343628 2209792 ~ 2240423 (+)
arhgap27l arhgap27 coding downstream 21550 2607346 ~ 2660278 (+)
wnk4b wnk4b,LOC108257086,LOC107683678,LOC107582920 coding downstream 85462 2671258 ~ 2741594 (+)
tanc2a tanc2,LOC107662401 coding downstream 259611 2845407 ~ 2890143 (+)
hdac5 hdac5 coding downstream 409481 2995277 ~ 3023586 (+)
lsm12a lsm12,LOC108256903,LOC107693683,LOC107562026,LOC107708984 coding downstream 445852 3031648 ~ 3039255 (+)
G337059 rdm1 non-coding upstream 32771 2450519 ~ 2551280 (+)
G337066 NA non-coding upstream 72384 2507560 ~ 2511667 (+)
G337052 NA non-coding upstream 186749 2397103 ~ 2397302 (+)
LOC117595896 NA non-coding upstream 324515 2242185 ~ 2259536 (+)
G336991 NA non-coding upstream 339821 2243493 ~ 2244230 (+)
G337113 NA non-coding downstream 211307 2797103 ~ 2797348 (+)
G337117 NA non-coding downstream 218712 2804508 ~ 2804746 (+)
G337119 NA non-coding downstream 235294 2821090 ~ 2821530 (+)
G337126 NA non-coding downstream 247792 2833588 ~ 2834059 (+)
G337127 NA non-coding downstream 248475 2834271 ~ 2834556 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 191514 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 232302 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 243790 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 638185 1876274 ~ 1945866 (+)
polr2k NA other upstream 903699 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1722126 4307922 ~ 4325036 (+)
G338163 NA other downstream 1766726 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 2030528 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 2112461 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 2172018 4757814 ~ 4762602 (+)

Expression


Co-expression Network