G337129


Basic Information

Item Value
gene id G337129
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2842664 ~ 2842875 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU399353
ACAAGATGCTTCCTGACCAGCAGTTTGCTCCCCTGTTGGCTCCGCAGGTACGTTTTGGGATTGCTGCGTTAGTTACAGGAAGCCAGTAGAAGTGAAGTGACATGAGATTTTATCAATTTCTCATGAATCATTTGACACTACTCTCATcatcatattttcatttctttagttTGTAGTTAGTTTTGCTGAAGTGCTAAAGGACCTTGGTCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399353 True 212 lncRNA 0.42 1 2842664 2842875

Neighbor

gene id symbol gene type direction distance location
wnk4b wnk4b,LOC108257086,LOC107683678,LOC107582920 coding upstream 101070 2671258 ~ 2741594 (+)
arhgap27l arhgap27 coding upstream 182386 2607346 ~ 2660278 (+)
LOC117595863 NA coding upstream 274624 2566692 ~ 2568040 (+)
ifnphi3 LOC108256834 coding upstream 285835 2554657 ~ 2556829 (+)
rdm1 rdm1 coding upstream 291591 2541482 ~ 2551073 (+)
tanc2a tanc2,LOC107662401 coding downstream 2532 2845407 ~ 2890143 (+)
hdac5 hdac5 coding downstream 152402 2995277 ~ 3023586 (+)
lsm12a lsm12,LOC108256903,LOC107693683,LOC107562026,LOC107708984 coding downstream 188773 3031648 ~ 3039255 (+)
vwa3a vwa3a coding downstream 198493 3041368 ~ 3067972 (+)
sdr42e2 LOC108256832 coding downstream 229025 3071900 ~ 3091878 (+)
G337128 NA non-coding upstream 209 2841356 ~ 2842455 (+)
G337127 NA non-coding upstream 8108 2834271 ~ 2834556 (+)
G337126 NA non-coding upstream 8605 2833588 ~ 2834059 (+)
G337119 NA non-coding upstream 21134 2821090 ~ 2821530 (+)
G337117 NA non-coding upstream 37918 2804508 ~ 2804746 (+)
G337136 NA non-coding downstream 19652 2862527 ~ 2862968 (+)
G337138 NA non-coding downstream 27808 2870683 ~ 2870909 (+)
LOC113546290 NA non-coding downstream 83649 2926524 ~ 2995271 (+)
G337194 NA non-coding downstream 176235 3019110 ~ 3019410 (+)
G337195 NA non-coding downstream 190969 3033844 ~ 3034394 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 450127 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 490915 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 502403 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 896798 1876274 ~ 1945866 (+)
polr2k NA other upstream 1162312 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1465047 4307922 ~ 4325036 (+)
G338163 NA other downstream 1509647 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1773449 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1855382 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1914939 4757814 ~ 4762602 (+)

Expression


Co-expression Network