G337136


Basic Information

Item Value
gene id G337136
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2862527 ~ 2862968 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU399360
AATAACGCCTTCTGTTATCTGCGTTAGAGATAAAAATATGAGGATGATAGCACCAAGGATGTTATCGTTCTAACATTTTGTCATAAAAATGCTAAAGATTTCAGTAATGAATGATAACGATTAATATACATTAGGTGGAATTTTCTCAAGATTAATATAACACGATTGATGGTATGCGCATAACGATGACCATGATATTTGTTCATTCGGTGATGTGAGGATCTCACACACTGACTCCATAGAAACCTTTCCTTTGCATGCTTTTTTCTGCAACCATAGCAACCACGAGGCGACAGCCGCGTGCTGTTTCCGTTTTCACTATTTTCAGGCCATCTTTGTTGTGAGGCAGCCTCAGATCAGACGTGTGGCATTTCACAGCACAGCGCAGGCTTGCGTAAGCCACACGCTGCCATCCTGTCCCTCCAACTAGCCTTCaactgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399360 True 442 lncRNA 0.42 1 2862527 2862968

Neighbor

gene id symbol gene type direction distance location
wnk4b wnk4b,LOC108257086,LOC107683678,LOC107582920 coding upstream 120933 2671258 ~ 2741594 (+)
arhgap27l arhgap27 coding upstream 202249 2607346 ~ 2660278 (+)
LOC117595863 NA coding upstream 294487 2566692 ~ 2568040 (+)
ifnphi3 LOC108256834 coding upstream 305698 2554657 ~ 2556829 (+)
rdm1 rdm1 coding upstream 311454 2541482 ~ 2551073 (+)
hdac5 hdac5 coding downstream 132309 2995277 ~ 3023586 (+)
lsm12a lsm12,LOC108256903,LOC107693683,LOC107562026,LOC107708984 coding downstream 168680 3031648 ~ 3039255 (+)
vwa3a vwa3a coding downstream 178400 3041368 ~ 3067972 (+)
sdr42e2 LOC108256832 coding downstream 208932 3071900 ~ 3091878 (+)
mfsd13al LOC108256898 coding downstream 249273 3112241 ~ 3127730 (+)
G337129 NA non-coding upstream 19652 2842664 ~ 2842875 (+)
G337128 NA non-coding upstream 20072 2841356 ~ 2842455 (+)
G337127 NA non-coding upstream 27971 2834271 ~ 2834556 (+)
G337126 NA non-coding upstream 28468 2833588 ~ 2834059 (+)
G337119 NA non-coding upstream 40997 2821090 ~ 2821530 (+)
G337138 NA non-coding downstream 7715 2870683 ~ 2870909 (+)
LOC113546290 NA non-coding downstream 63556 2926524 ~ 2995271 (+)
G337194 NA non-coding downstream 156142 3019110 ~ 3019410 (+)
G337195 NA non-coding downstream 170876 3033844 ~ 3034394 (+)
G337197 LOC108256899 non-coding downstream 233029 3095997 ~ 3102191 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 469990 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 510778 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 522266 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 916661 1876274 ~ 1945866 (+)
polr2k NA other upstream 1182175 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1444954 4307922 ~ 4325036 (+)
G338163 NA other downstream 1489554 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1753356 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1835289 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1894846 4757814 ~ 4762602 (+)

Expression


Co-expression Network