G337195


Basic Information

Item Value
gene id G337195
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3033844 ~ 3034394 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU399424
gtgagagtgtgtgtgtgtgtgagagtgtgtgtgtgtgagagagtgtgtgtgtgtgtagtgacagCAGCATGTGGCTCAGTGGGTGATGACAGACGGCGCTGTATCTGCTCACAGTGTCACGTTTTAGCTGCttacaagcaaaaataaagacagaaaccTATGACATGTACATCAGAAAGTCACGGAAATACACTGTGGAGAAAACGCAGCCGGGTATTGAATAGTAAACGATGGATTAATAGTCTGTACGTCTGGATTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399424 True 262 lncRNA 0.45 2 3033844 3034394

Neighbor

gene id symbol gene type direction distance location
hdac5 hdac5 coding upstream 10258 2995277 ~ 3023586 (+)
tanc2a tanc2,LOC107662401 coding upstream 143701 2845407 ~ 2890143 (+)
wnk4b wnk4b,LOC108257086,LOC107683678,LOC107582920 coding upstream 292250 2671258 ~ 2741594 (+)
arhgap27l arhgap27 coding upstream 373566 2607346 ~ 2660278 (+)
LOC117595863 NA coding upstream 465804 2566692 ~ 2568040 (+)
vwa3a vwa3a coding downstream 6974 3041368 ~ 3067972 (+)
sdr42e2 LOC108256832 coding downstream 37506 3071900 ~ 3091878 (+)
mfsd13al LOC108256898 coding downstream 77847 3112241 ~ 3127730 (+)
si:ch211-165g14.1 NA coding downstream 94310 3128704 ~ 3137973 (+)
znf750 znf750 coding downstream 234544 3268938 ~ 3272927 (+)
G337194 NA non-coding upstream 14434 3019110 ~ 3019410 (+)
LOC113546290 NA non-coding upstream 38573 2926524 ~ 2995271 (+)
G337138 NA non-coding upstream 162935 2870683 ~ 2870909 (+)
G337136 NA non-coding upstream 170876 2862527 ~ 2862968 (+)
G337129 NA non-coding upstream 190969 2842664 ~ 2842875 (+)
G337197 LOC108256899 non-coding downstream 61603 3095997 ~ 3102191 (+)
G337233 NA non-coding downstream 178117 3212511 ~ 3299308 (+)
G337304 NA non-coding downstream 455459 3489853 ~ 3491029 (+)
G337273 NA non-coding downstream 676308 3710702 ~ 3712919 (+)
G337374 NA non-coding downstream 708743 3743137 ~ 3745935 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 641307 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 682095 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 693583 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 1087978 1876274 ~ 1945866 (+)
polr2k NA other upstream 1353492 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1273528 4307922 ~ 4325036 (+)
G338163 NA other downstream 1318128 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1581930 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1663863 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1723420 4757814 ~ 4762602 (+)

Expression


Co-expression Network