G337197 (LOC108256899)


Basic Information

Item Value
gene id G337197
gene name LOC108256899
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3095997 ~ 3102191 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU399433
TCTTTAATCGGCCATTTTAAGCCCTAATCGAGCGTTAGCCACTGTTCATGCCATCGTTACGATTCCCCACATGCCCTAACTCTTTAAAAAGGCATTTCTATAGCGTTCAGCTACAAAGGCTACAAAGTTCAGCACCATTGTACAGGTTATGCATATTCGATTTTATAAGCATTTTATCAATGATGGTAATAAATGTCACAAACATTTTAAGTACAATACAGACAGATTgagtaagaaaataaaaatggatggAAATTATCAGGAATGGACgtttgtaaatgtatatatgtgtgtgtgtgtgtgcttgtttacATTCAATTCAAGCGAAAcgttttgtatttaattttttttcccccatgcttAAAGGAAGTTAGCATTCTGCATCAAAGCACAATGctaccctttttttttcttcttcattgttccatttttcccccaaaagcaTTAGCATAGAAAATGCCACTATCAACTTCTTAGCACCAACCGGAATGAAGACTCTGATCTCCAAACATGTGCATCTAATGCAGGAATAACGCtcatatattaattaattaatctataTTACAATATCTGCCTCGCTAATATAAATACGCAAATAagccatctgaccaatcaggacgTTTCTGTGGCAGGATTAATCACACTATTCACACAATCCGACTAATCTATTACGCCTAAATACTACAGGTTGACCTTTGTCTACGACTTATTTATATAAACAGATCTCTATTAGGATATTTAAcgttattatgaaattattcatatttatcacattaaataaaattcatgcTATACTTGTGACCTAAGAAAGCACtgatataacatttattttaatatattttaatttattccattttcctgctacagctttatttatttatttataagcttGTCCCTGTCACAAGAATAATGTATTCTGAGATGACAAAATAATTTTCtctaaattataaaatgtttcattgcgataatgaattaattacaaTCTagcaaatataaaatgttttcctgAGAAAACGTACTACATGCGCTACAAGCCTATGGAAATTTACTGGTATAACAAATTTAACATAAACTTACATCTGGATCGaagcagaggtgccaacatttatggTTTAGGTATAGACGTTTATGGGTTTTGAcctgttgctatggtgataaAACTATTCTGCCTTTTCAGCTAAAGTAGCGGTGGAAAAATTCACCGAAGGGGAAAGGGCACATAACGTGAAAGACGCGTTTAATTGCGGTAGCGCTGGATTTCACTTTGTGTCGACTATCTaggtgacctctgacctgtgaCTTTACGAGCCTCAGAAAACCAGAGGGCGGGACTCATGGTGTATTTGGTGTACACATCTCTCTGGTTTCTTACTGTGACTTGGCGCACATctggagggaaaaaacaacataaaaatggaaaattagcTCTCATCCACAGGCATACGCTTGGGTATGcggtaaaactttttttttcctgctgggATTTTCTCATAAATAATAAaaataataataataataataataataataataataataataataataattcacctCGAATTTAATTGGTAatcatattatatatcataAAGTATTGAATTATATCGGAGAATGTTACTGGAATATTTTAGGACTGGGTAATAAAAGGTTCCTGTATCGGTCGGGTCACGGTCACGGTCACGGCTGTATATCAGAAACCACAACGTGTTTGCGATCGAGCGCGTTGCTTAcggaatcatttttaaatgcgTAGTGTAGGATATCCAACACAGTCCtgatatcccacaatgcactgggATAGGTTAGCACCGAGACTCTCCAAATGATGTATCCTGAGCCGCCCATTTTACGTGAATgaaaacaaagtgcaaagttTTTAAAATGGACGGCGGCTGATGAGAATACTGCTATTTGACccggtaaaaaaaaacaaaacgaaacacacacacgacccAGAGTCACTGTTTGCGCTTGGGTGTGGCCCTGTTCTCACTCAGGTCCTCTTTGGTCTTCTGGATACATGTGAAGATCTCCTTGAAGAGTGCCCTGTACTCCGGCTGGTACGTGTCGTCCGTGAGGGAGGCTGATTGAGGTTTGAGGGACGCGGCGGGCGTCTGGACGGCTTTGTGGCTCTGTGCGTCGTCTCCGCGTTGGCAGCGCAGCAGCAGCTCCTCGTATTTGGTCTTCAGTACGCTGTACTGCGCGTCCACCTCGTTCAGCAGAGAGATTCCGCGCTGCCTCACCGCCTCCGATCGCCGTATACACGTCAGCTCGTGGCCACGTCTCAGTTCCTGTTCTGacccttcctcttcctctacCACCTCCGCTCCTGACTCCGCCCCCTTCTCCTCAGTGAGGAAGATCACGGCGTCGGCTACAAGCGAGTCTGTAGGTCTAACGCTGGATGATTCCGAGCGCCACAGCTGCCGCAGCTCTTCCACCTCGGCCTCCAGTTCGGCTTGGTGCCGTCGCGCCCCCTCCAGCTGTGCCAGCTGTTCCTCCAGCGCCCGGTTCTCTCGCTCGGTCAGCTCCATAACCTTCTCCGCCGCTTCCCGACGCTCGCGCTCGCTgcccagctgtgtgtgtaggCTACGCAACGCACTCTGCAGGGCAGACTTCTCCTCTTCCACCAGACCTGCATCCAGCGCCCACCACGAGCGATCGTCACTGTGGCTTTCCGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399433 True 2683 lncRNA 0.42 2 3095997 3102191

Neighbor

gene id symbol gene type direction distance location
sdr42e2 LOC108256832 coding upstream 4119 3071900 ~ 3091878 (+)
vwa3a vwa3a coding upstream 28025 3041368 ~ 3067972 (+)
lsm12a lsm12,LOC108256903,LOC107693683,LOC107562026,LOC107708984 coding upstream 56742 3031648 ~ 3039255 (+)
hdac5 hdac5 coding upstream 72411 2995277 ~ 3023586 (+)
tanc2a tanc2,LOC107662401 coding upstream 205854 2845407 ~ 2890143 (+)
mfsd13al LOC108256898 coding downstream 10050 3112241 ~ 3127730 (+)
si:ch211-165g14.1 NA coding downstream 26513 3128704 ~ 3137973 (+)
znf750 znf750 coding downstream 166747 3268938 ~ 3272927 (+)
LOC113546219 LOC108256900 coding downstream 195719 3297910 ~ 3305283 (+)
adgrl1a adgrl1,LOC107599314,LOC107711219 coding downstream 322114 3424305 ~ 3635392 (+)
G337195 NA non-coding upstream 61603 3033844 ~ 3034394 (+)
G337194 NA non-coding upstream 76587 3019110 ~ 3019410 (+)
LOC113546290 NA non-coding upstream 100726 2926524 ~ 2995271 (+)
G337138 NA non-coding upstream 225088 2870683 ~ 2870909 (+)
G337136 NA non-coding upstream 233029 2862527 ~ 2862968 (+)
G337233 NA non-coding downstream 110320 3212511 ~ 3299308 (+)
G337304 NA non-coding downstream 387662 3489853 ~ 3491029 (+)
G337273 NA non-coding downstream 608511 3710702 ~ 3712919 (+)
G337374 NA non-coding downstream 640946 3743137 ~ 3745935 (+)
G337363 NA non-coding downstream 657465 3759656 ~ 3762176 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 703460 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 744248 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 755736 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 1150131 1876274 ~ 1945866 (+)
polr2k NA other upstream 1415645 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1205731 4307922 ~ 4325036 (+)
G338163 NA other downstream 1250331 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1514133 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1596066 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1655623 4757814 ~ 4762602 (+)

Expression


Co-expression Network