G337233


Basic Information

Item Value
gene id G337233
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3212511 ~ 3299308 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU399479
agtatatatatatatatatattttttttttttctccctatgAATAAGCACCTGGCTCTTGTGGTTGATCTTGGCGAACACAGTGCCGGAGTCTGTGCTGTAGCTCTGGCCCTCACTGATGCATCCTCCCCCTGAGGAGCCTACAGCCTTCACCCTGCTGCAGCCCAGCTCCCTCTTTAACAGCTGCTCCATCACACCCTCCTGCTATTCCCTGTTTATTACACCACCACTGCGCTGCTTATACACGCGCTCTATAACGCCTGCACGCGCGCTCACGTGCGCCTTTTCACTTCCgctccaaaaacaaacaaacttttaaTGCAGGTAGTTTAAAAGCCGCCGCAGCTCTGCGTTATCACCTGTTTTTTTCTGGTGATAACGTCAAATAAATCCCCGGAAAACCCAATTGAAACACGAGTTCCAAAGTACGAGTTCCCGGAAGTAGGCGCATGCGCAGTGCGAATCCGGCGACGTCACATACCGGAAGTAAATTTCAAGTGCAAGATGAAAAGGGTTTTCAAAACATCTAAATCTataaggattttttaaaaaaaataaactatatgCTCCTAACGGTTTAAAAATAGCCATTAGCATTGTTTTGAATTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399479 True 609 lncRNA 0.44 2 3212511 3299308

Neighbor

gene id symbol gene type direction distance location
si:ch211-165g14.1 NA coding upstream 74538 3128704 ~ 3137973 (+)
mfsd13al LOC108256898 coding upstream 84781 3112241 ~ 3127730 (+)
sdr42e2 LOC108256832 coding upstream 120633 3071900 ~ 3091878 (+)
vwa3a vwa3a coding upstream 144539 3041368 ~ 3067972 (+)
lsm12a lsm12,LOC108256903,LOC107693683,LOC107562026,LOC107708984 coding upstream 173256 3031648 ~ 3039255 (+)
adgrl1a adgrl1,LOC107599314,LOC107711219 coding downstream 124997 3424305 ~ 3635392 (+)
tnfsf18 NA coding downstream 423881 3723189 ~ 3732164 (+)
qtrt1 qtrt1,LOC107744982,LOC107661875 coding downstream 512318 3811626 ~ 3821302 (+)
LOC113546282 LOC108257500,LOC108429693,LOC565691,LOC107711212,LOC107599308,LOC107661824 coding downstream 526651 3825959 ~ 3929254 (+)
tecra tecra,LOC108256782,LOC108429689,LOC107711203,LOC107602715,LOC107661839 coding downstream 666069 3965377 ~ 3976866 (+)
G337197 LOC108256899 non-coding upstream 110320 3095997 ~ 3102191 (+)
G337195 NA non-coding upstream 178117 3033844 ~ 3034394 (+)
G337194 NA non-coding upstream 193101 3019110 ~ 3019410 (+)
LOC113546290 NA non-coding upstream 217240 2926524 ~ 2995271 (+)
G337138 NA non-coding upstream 341602 2870683 ~ 2870909 (+)
G337304 NA non-coding downstream 190545 3489853 ~ 3491029 (+)
G337273 NA non-coding downstream 411394 3710702 ~ 3712919 (+)
G337374 NA non-coding downstream 443829 3743137 ~ 3745935 (+)
G337363 NA non-coding downstream 460348 3759656 ~ 3762176 (+)
LOC113546270 NA non-coding downstream 470277 3769585 ~ 3771026 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 819974 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 860762 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 872250 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 1266645 1876274 ~ 1945866 (+)
polr2k NA other upstream 1532159 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 1008614 4307922 ~ 4325036 (+)
G338163 NA other downstream 1053214 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1317016 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1398949 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1458506 4757814 ~ 4762602 (+)

Expression


Co-expression Network