G337273


Basic Information

Item Value
gene id G337273
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3710702 ~ 3712919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU399520
CGTGTTGTTCAACTTCCGCACTCGTTGTATTTTCCCTCTCAAGAACAACAGCTTTGATGGATACAgctgaatgcaaaagtttgcacatcCTTGCTTCAAAAAGATCCCAATAAAATTAACCCAAtgaagcatctttttttttgttgctaagTTTGTTAAGTTTTACATTTGTTCCTTTATcatcacaaataacaaaaattatGATAAAGTTACTGTTCGTTTCATCCATTGCTGCTGGCAGCGATCTCCCTAAACACTTTGATATGTTCTTCTCCAGCTCAGTGAAATGTCAATATTTTCTGTTCGAACCCTTCTGAAAGCTGTATTCCTGATCACGGCAATCTGCTTTAGACTTTCCATGTGACTTATACCAAGGTAAACATGTGTTGTCTGTTTAAGGTAATTAAGCATCTAATAAGTGACTTTCAACTAAATTAACCAGAGAATGTCAGGATGCAAATTTCTGAGCTTGTTAAGAAAGATAACTGTCAGCTGCTGTTATATTTAGACTGTAGATTTCAAACACGAGTTGAACAAATTCTGTTTTGTATGCTGTCAGAAAAAGAGTAATGAACTTGTCTGTCTTCCTTGTTTGTGGGGTGATATCGGTAGCCatctgtacctttaatatgcatctttcacctggaaatgtggctataatatatctttaaaaaatgttttaaggtacataattggaccacAACgaccttttagagtaaagctttaaaggtacattacacGCAtcctaggtaaaagatacaaactaaaggtacaaaaggtgtaccatggagggtaccaccccagcaacaatgAATGGTACCAGCAAGTTTCGTACCATTTTTTTAAGAGTACAGGTAAACCGTTATGCTGATCTtgccattttttgtttgtttgtttgtttgaacacCCAAAAACAAAGGGGTGCAAACTTTGATGTCCCAGGCCAATAATGCTCACTGTCAAGTGCAACTGCATTCTAAACAGTATGCCAAAGTGGTACGACCTACTTGGTTACCATAGTGACCAGGGATGGCGTATTATTGCGACATACTAATAAGTACACAAATATGCAGCCTGGGATTTTACCGCATTAACAGCAATTAGCATAAACAAACTTCCTACTTTGTCCTTGTTAAAAACAGCTCGTATGTAAAGGCTGTAAGGAGTTAACTGTGGTCAATTGCAGTATTATTGTCATATTATTTAGTACAAAATAAGGTTTTGGATTAACGAACTAGCCAATTTTCCATTAAGGAGAAAGTGAAGGATTTGCAGTTGTGttgtgtaattaaattaaattggtATCTAACTGCCACAAATCTGGTCTGTCAAGAACTCATATTGTTATATTGTAGATAAACAGCTAAGCAACCCGGCATGGTTCTGCTTTAGAAAACAGTTCTGTAATGTAGCCTAATTGatactgctttttttttttcctattatgCAACATAAATAAGCACTGATCCTACCAGCAAGGACACACTGGACATGCAACCTCAGGAAGCAGTCGTTCTTACCCACAATCAGACACAAGATGTCCAAACCGACCAGCATCCTGGGGCTGGAGCTGTGAGCCCGGGTCACGGTTCGACTCTGACCGGTTCCGGCTTTCCCGTTCTCCCGCAGCGGCTCCGCGGCTTCACCGCACTCCGCCAACCGCCCCTGGATCTCCAGGTCTCGCTCCACGTCTCCACCGCCGCTGTTCACGGTAAACTTCTCCATATTGCTGCTTAATAGTTTAATAAACCAGATAGGCACTTTCCCTTCGTGTTCGGTTGCTTTTCCAGTCCAGCGTCCGCGCACATGAAGTTTTTGTCTTCCACAGGTATAAAAGTTTAGCTAGAGAGCTTTTCTGAAAGTGAAGCACTAGTGCGCAGGATATCGGGTCATGTTTACAGAGAAATCCTGCTTTAACCGAGCAGATTAATAAGTCACAGACACCGCAGCCGGAGCCAAGTCCCAAATCTGAAGCCAACAGGCACTTTCCGTGTacttagggggaaaaaatctcgCCATCCTCATGCTGGATTAAACCCGGTCCAGGAGCTGTACAGGTCCAGTTCCAGACAGAGAAACCTCACGCTTTCTAAAACACTCCTCAttacaaaacacagaacacactccTCAAACTACCTGAGTCACTGAACTCCATATGGGAGCTTTTTCCTCCCTCACAAGTAAACTCAAAGAGCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399520 True 2197 lncRNA 0.41 2 3710702 3712919

Neighbor

gene id symbol gene type direction distance location
adgrl1a adgrl1,LOC107599314,LOC107711219 coding upstream 75310 3424305 ~ 3635392 (+)
LOC113546219 LOC108256900 coding upstream 405419 3297910 ~ 3305283 (+)
znf750 znf750 coding upstream 437775 3268938 ~ 3272927 (+)
si:ch211-165g14.1 NA coding upstream 572729 3128704 ~ 3137973 (+)
mfsd13al LOC108256898 coding upstream 582972 3112241 ~ 3127730 (+)
tnfsf18 NA coding downstream 10270 3723189 ~ 3732164 (+)
qtrt1 qtrt1,LOC107744982,LOC107661875 coding downstream 98707 3811626 ~ 3821302 (+)
LOC113546282 LOC108257500,LOC108429693,LOC565691,LOC107711212,LOC107599308,LOC107661824 coding downstream 113040 3825959 ~ 3929254 (+)
tecra tecra,LOC108256782,LOC108429689,LOC107711203,LOC107602715,LOC107661839 coding downstream 252458 3965377 ~ 3976866 (+)
crb3a NA coding downstream 326900 4039819 ~ 4048530 (+)
G337304 NA non-coding upstream 219673 3489853 ~ 3491029 (+)
G337233 NA non-coding upstream 411394 3212511 ~ 3299308 (+)
G337197 LOC108256899 non-coding upstream 608511 3095997 ~ 3102191 (+)
G337195 NA non-coding upstream 676308 3033844 ~ 3034394 (+)
G337194 NA non-coding upstream 691292 3019110 ~ 3019410 (+)
G337374 NA non-coding downstream 30218 3743137 ~ 3745935 (+)
G337363 NA non-coding downstream 46737 3759656 ~ 3762176 (+)
LOC113546270 NA non-coding downstream 56666 3769585 ~ 3771026 (+)
G337365 NA non-coding downstream 62767 3775686 ~ 3779213 (+)
G337389 NA non-coding downstream 91233 3804152 ~ 3805620 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 1318165 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 1358953 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 1370441 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 1764836 1876274 ~ 1945866 (+)
polr2k NA other upstream 2030350 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 595003 4307922 ~ 4325036 (+)
G338163 NA other downstream 639603 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 903405 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 985338 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1044895 4757814 ~ 4762602 (+)

Expression


Co-expression Network