G337304


Basic Information

Item Value
gene id G337304
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3489853 ~ 3491029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU399552
TCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCACCCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCGACCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCACCCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCACCCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACATCAACCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCGACCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCGACCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACATCAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU399552 True 392 lncRNA 0.46 2 3489853 3491029

Neighbor

gene id symbol gene type direction distance location
LOC113546219 LOC108256900 coding upstream 184570 3297910 ~ 3305283 (+)
znf750 znf750 coding upstream 216926 3268938 ~ 3272927 (+)
si:ch211-165g14.1 NA coding upstream 351880 3128704 ~ 3137973 (+)
mfsd13al LOC108256898 coding upstream 362123 3112241 ~ 3127730 (+)
sdr42e2 LOC108256832 coding upstream 397975 3071900 ~ 3091878 (+)
tnfsf18 NA coding downstream 232160 3723189 ~ 3732164 (+)
qtrt1 qtrt1,LOC107744982,LOC107661875 coding downstream 320597 3811626 ~ 3821302 (+)
LOC113546282 LOC108257500,LOC108429693,LOC565691,LOC107711212,LOC107599308,LOC107661824 coding downstream 334930 3825959 ~ 3929254 (+)
tecra tecra,LOC108256782,LOC108429689,LOC107711203,LOC107602715,LOC107661839 coding downstream 474348 3965377 ~ 3976866 (+)
crb3a NA coding downstream 548790 4039819 ~ 4048530 (+)
G337233 NA non-coding upstream 190545 3212511 ~ 3299308 (+)
G337197 LOC108256899 non-coding upstream 387662 3095997 ~ 3102191 (+)
G337195 NA non-coding upstream 455459 3033844 ~ 3034394 (+)
G337194 NA non-coding upstream 470443 3019110 ~ 3019410 (+)
LOC113546290 NA non-coding upstream 494582 2926524 ~ 2995271 (+)
G337273 NA non-coding downstream 219673 3710702 ~ 3712919 (+)
G337374 NA non-coding downstream 252108 3743137 ~ 3745935 (+)
G337363 NA non-coding downstream 268627 3759656 ~ 3762176 (+)
LOC113546270 NA non-coding downstream 278556 3769585 ~ 3771026 (+)
G337365 NA non-coding downstream 284657 3775686 ~ 3779213 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 1097316 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 1138104 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 1149592 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 1543987 1876274 ~ 1945866 (+)
polr2k NA other upstream 1809501 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 816893 4307922 ~ 4325036 (+)
G338163 NA other downstream 861493 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 1125295 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 1207228 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 1266785 4757814 ~ 4762602 (+)

Expression


Co-expression Network