G338057


Basic Information

Item Value
gene id G338057
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4255557 ~ 4255899 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU400439
AATGACATAAAGCCATCCTGTGCAAATTGCACATATTGCAGTTCTGGTGTTTTCACATTATGGCATTTTCAAAATTACCCATGATATTGTGAACCAGATCTATGGTGTTCCTGAAGATGCTAGCCTTTAAAAGAGGACTCCAGGTCAGCCGTGTCACTGGGATATTTAGGCTACTGAAAACATGATTACTTtctccctacacacacataccacagaTCTGTCAGGAGAAAACACTGAATtactttaaacacacattcaccacTAGTTGTTTACAATATGTTGACTAGTGgaatgtaaaatattacttGGTGAATTTTTTCTTGAACATTTTAATGCACCATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400439 True 343 lncRNA 0.36 1 4255557 4255899

Neighbor

gene id symbol gene type direction distance location
LOC113546255 LOC108257394 coding upstream 187613 4061506 ~ 4067944 (+)
crb3a NA coding upstream 207027 4039819 ~ 4048530 (+)
tecra tecra,LOC108256782,LOC108429689,LOC107711203,LOC107602715,LOC107661839 coding upstream 278691 3965377 ~ 3976866 (+)
LOC113546282 LOC108257500,LOC108429693,LOC565691,LOC107711212,LOC107599308,LOC107661824 coding upstream 326303 3825959 ~ 3929254 (+)
qtrt1 qtrt1,LOC107744982,LOC107661875 coding upstream 434255 3811626 ~ 3821302 (+)
zgc:103625 mettl26,LOC107673781,LOC107722893,LOC107599339 coding downstream 7940 4263839 ~ 4268179 (+)
epn3a LOC108256872,LOC108429673 coding downstream 74269 4330168 ~ 4352491 (+)
LOC113546181 NA coding downstream 102998 4358897 ~ 4368269 (+)
LOC113546170 NA coding downstream 123260 4379159 ~ 4401024 (+)
ptger1c LOC108256829 coding downstream 152113 4408012 ~ 4415254 (+)
G337381 LOC108257371,LOC108257372,LOC108429690,LOC103024650,LOC107599305,LOC107670512,LOC107728686 non-coding upstream 212368 3936171 ~ 4043189 (+)
G337389 NA non-coding upstream 449937 3804152 ~ 3805620 (+)
G337365 NA non-coding upstream 476344 3775686 ~ 3779213 (+)
LOC113546270 NA non-coding upstream 484531 3769585 ~ 3771026 (+)
G337363 NA non-coding upstream 493381 3759656 ~ 3762176 (+)
G338116 NA non-coding downstream 12347 4268246 ~ 4268455 (+)
G338147 NA non-coding downstream 70153 4326052 ~ 4326495 (+)
G338164 NA non-coding downstream 83305 4339204 ~ 4370211 (+)
G338252 NA non-coding downstream 421618 4677517 ~ 4679625 (+)
G338246 NA non-coding downstream 462298 4718197 ~ 4731105 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 1863020 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 1903808 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 1915296 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 2309691 1876274 ~ 1945866 (+)
polr2k NA other upstream 2575205 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 52023 4307922 ~ 4325036 (+)
G338163 NA other downstream 96623 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 360425 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 442358 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 501915 4757814 ~ 4762602 (+)

Expression


Co-expression Network