G338116


Basic Information

Item Value
gene id G338116
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4268246 ~ 4268455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU400503
GCACAACTTTTTGTCCTGCTGTCCTTCATATATAGAGttaattttgtgtaaaaagTATTCATATTACAAAACCACAAGcaaaatacactacatggccaaaagtatgtggacacctgaccataacattcatactGACtctgcttgttgaacatcccattccagatttagtcccaatttgctgttatcctccactcctctgcgaagtctttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400503 True 210 lncRNA 0.38 1 4268246 4268455

Neighbor

gene id symbol gene type direction distance location
zgc:103625 mettl26,LOC107673781,LOC107722893,LOC107599339 coding upstream 67 4263839 ~ 4268179 (+)
LOC113546255 LOC108257394 coding upstream 200302 4061506 ~ 4067944 (+)
crb3a NA coding upstream 219716 4039819 ~ 4048530 (+)
tecra tecra,LOC108256782,LOC108429689,LOC107711203,LOC107602715,LOC107661839 coding upstream 291380 3965377 ~ 3976866 (+)
LOC113546282 LOC108257500,LOC108429693,LOC565691,LOC107711212,LOC107599308,LOC107661824 coding upstream 338992 3825959 ~ 3929254 (+)
epn3a LOC108256872,LOC108429673 coding downstream 61713 4330168 ~ 4352491 (+)
LOC113546181 NA coding downstream 90442 4358897 ~ 4368269 (+)
LOC113546170 NA coding downstream 110704 4379159 ~ 4401024 (+)
ptger1c LOC108256829 coding downstream 139557 4408012 ~ 4415254 (+)
slc27a1a slc27a1,LOC107757377,LOC107670527,LOC107567246,LOC107672489,LOC107711240 coding downstream 147316 4415771 ~ 4434965 (+)
G338057 NA non-coding upstream 12347 4255557 ~ 4255899 (+)
G337381 LOC108257371,LOC108257372,LOC108429690,LOC103024650,LOC107599305,LOC107670512,LOC107728686 non-coding upstream 225057 3936171 ~ 4043189 (+)
G337389 NA non-coding upstream 462626 3804152 ~ 3805620 (+)
G337365 NA non-coding upstream 489033 3775686 ~ 3779213 (+)
LOC113546270 NA non-coding upstream 497220 3769585 ~ 3771026 (+)
G338147 NA non-coding downstream 57597 4326052 ~ 4326495 (+)
G338164 NA non-coding downstream 70749 4339204 ~ 4370211 (+)
G338252 NA non-coding downstream 409062 4677517 ~ 4679625 (+)
G338246 NA non-coding downstream 449742 4718197 ~ 4731105 (+)
G338658 NA non-coding downstream 972870 5241325 ~ 5241584 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 1875709 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 1916497 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 1927985 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 2322380 1876274 ~ 1945866 (+)
polr2k NA other upstream 2587894 1675040 ~ 1680352 (+)
rsad1 rsad1 other downstream 39467 4307922 ~ 4325036 (+)
G338163 NA other downstream 84067 4352522 ~ 4355029 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 347869 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 429802 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 489359 4757814 ~ 4762602 (+)

Expression


Co-expression Network