G338164


Basic Information

Item Value
gene id G338164
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4339204 ~ 4370211 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU400579
cacatatatatatatatatatatatatataaaattctcTATAATTAGGAAATCTAATAAGAAATAGATATAAATGTATTGAtaattgtaaaacatttttttaaaaatttattgtAAACAATCTAGCCTCAATCGTGATCACTCTCATTATGAACTCATAGcacacaatataataaaaatttgtCTATAATtgtctataatataatataatatatatatgcatggTGTATGGTATGGCTTTTATCTAATTGGTTTATCTTTCAAGGCCTTcttttaataaagcattatttAGAGTCACATTAGGACCTTAAACGGTTCAATAAAGTGCTTTTTTAGGTTTGCttaggtgtttttttccccaggaaaTTACAGGCCTCTTGCTATTCCTGTTATTTTGCATATGGCTTGTACAAAGTgcttgtttcttgttttctgttCATTGCCAGACATGTGCAAGTTGGTTAACCCAACGGATACAAATCTGTGCTGTATTTTGTTATGCAATTAAGAAGGAGGAGAAAGTGAAGCTAGAATTGTCAGAGATAGCTGGGATTTGAAGCTGGAACAATGGACAGTTCTGTGAAAtccagggattttttttttttttttttaaatgaatttctgGTATAACCACAATACTATCCACTCCATTATCCCACAGCAGAATGGTTTTGTACATCACAGACACTATCTGCACATACACTTTGCcattttgtgtgaatttattacatttaattcagattatttgctataaaacaagttGGCCATGAACTATTTTAAcctagcccaatctggcaacccggtcATTAACTGTCTGTtgctttcttctccttctccactGAGATGTTCATAGAGCGAGCATGGGGCAAGAAAAGTCTTTTAGTCTGTTAGTGCTTGTTGctgttcccatttttgaccagtaggtgtaATAATAACTCCATGGAAGCTAAGTGAGCAAATGTGTGCACCTCCCCATGAttgcacaacatctagaaaggcaagcaaataaatggaaaattgGCTTATATCTTccaaataataacatttatggTGGGGATTGGTATTTCAAACTCTTTAAAGTGTATGCAGTTGTGAATCAGGACTTTATGGAGAATAATATTTGTTGAACGGCTGATATGAATGGTGGGGCTCTGCCCAGGCTGTCCCTATGGATGTGCCACAActgttcctgttatcgcttaccttatagcagctataaacagtcctccctcaccagcttttatttctctctctctctctctctctctctctctctcttggaggttagggggaaaaaaattcagcttatcaagttacagagaaaccgcaaagctgAAAACTTAGCTACAGACTATTACaacgcactgacactggagactccttccataaatatcagaattgagaattcaacagcactgataTGTCATGGGACCCTTGGCTGAGAGGATCAATGGTGTGCCATTAGATTTTTTGATATCCAGACACATTTCTTGTTGGAAATTATTGCAATATTAATTATCTTCCATtccaatttaataaataaaaatgacttcaaacattgTAA

Function

GO:

id name namespace
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko00730 Thiamine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU400579 True 1563 lncRNA 0.35 2 4339204 4370211

Neighbor

gene id symbol gene type direction distance location
zgc:103625 mettl26,LOC107673781,LOC107722893,LOC107599339 coding upstream 71025 4263839 ~ 4268179 (+)
LOC113546255 LOC108257394 coding upstream 271260 4061506 ~ 4067944 (+)
crb3a NA coding upstream 290674 4039819 ~ 4048530 (+)
tecra tecra,LOC108256782,LOC108429689,LOC107711203,LOC107602715,LOC107661839 coding upstream 362338 3965377 ~ 3976866 (+)
LOC113546282 LOC108257500,LOC108429693,LOC565691,LOC107711212,LOC107599308,LOC107661824 coding upstream 409950 3825959 ~ 3929254 (+)
LOC113546170 NA coding downstream 8948 4379159 ~ 4401024 (+)
ptger1c LOC108256829 coding downstream 37801 4408012 ~ 4415254 (+)
slc27a1a slc27a1,LOC107757377,LOC107670527,LOC107567246,LOC107672489,LOC107711240 coding downstream 45560 4415771 ~ 4434965 (+)
LOC113546278 LOC108256875 coding downstream 75718 4445929 ~ 4451919 (+)
pgls pgls coding downstream 101520 4471731 ~ 4476972 (+)
G338147 NA non-coding upstream 12709 4326052 ~ 4326495 (+)
G338116 NA non-coding upstream 70749 4268246 ~ 4268455 (+)
G338057 NA non-coding upstream 83305 4255557 ~ 4255899 (+)
G337381 LOC108257371,LOC108257372,LOC108429690,LOC103024650,LOC107599305,LOC107670512,LOC107728686 non-coding upstream 296015 3936171 ~ 4043189 (+)
G337389 NA non-coding upstream 533584 3804152 ~ 3805620 (+)
G338252 NA non-coding downstream 307306 4677517 ~ 4679625 (+)
G338246 NA non-coding downstream 347986 4718197 ~ 4731105 (+)
G338658 NA non-coding downstream 871114 5241325 ~ 5241584 (+)
LOC117595846 NA non-coding downstream 1006995 5377206 ~ 5386152 (+)
G338683 NA non-coding downstream 1017777 5387988 ~ 5392192 (+)
rsad1 rsad1 other upstream 14168 4307922 ~ 4325036 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 1946667 2358116 ~ 2392537 (+)
LOC117595892 LOC108257284,LOC108257282,LOC108257281,LOC108257289,LOC108257310,LOC108272567,LOC108261104,LOC108280065,LOC108272472,LOC108261175,LOC108279530,LOC100526730,LOC108257326,LOC108257286,LOC108261265 other upstream 1987455 2185892 ~ 2351749 (+)
LOC113546301 LOC108257282,LOC108257281,LOC108257284,LOC108257326,LOC108257289,LOC108257286,LOC108257310 other upstream 1998943 2302145 ~ 2340261 (+)
G336822 ldlrad4 other upstream 2393338 1876274 ~ 1945866 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other downstream 246113 4616324 ~ 4668256 (+)
brd4 LOC108257120,LOC108429657 other downstream 328046 4698257 ~ 4752669 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other downstream 387603 4757814 ~ 4762602 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other downstream 391102 4761313 ~ 4780386 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 1963778 6333989 ~ 6343909 (+)

Expression


Co-expression Network