stxbp2 (stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364)


Basic Information

Item Value
gene id stxbp2
gene name stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4761313 ~ 4780386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU400698
TTGAGTTTCATTTAACTTGTGCCAAAATCCTtgactgtacttttttttttttttttttttttgcataaaagtgcagttCATCTCTATAGCTTCTCCAGCTGTTGGGTGAAAGCTAGAAAACGCTGTATATTAACGTGATGGTGACGTCCTGCTgttcttgcttttctttcttttctttttcttttgcagtcTAGGCAGCGATGATGATTTTTGTTGATTCTAAACTGGTGCacttttctttatctttctttaaTGTTATCACAGAAGTTAGTTATTTACTtgggta
>XM_026946032.2
AACACATGTATATTAACCGGAAGTCACAGCTGGACTTTTAGTGTCGCTTCCTTCACGCCGATCTGGAAATTTGACAACACGGAAGTGTCAAAATGGCTCCGAGTGGACTCAAAGCGGTGGTGGGAGAGAaaATCCTCAACGGAGTCCTGAAGAGTGTGAAGAAAGATGGGGAGTGGAAGgtgCTTATTGTTGATCACATGAGCATGCGGATTCTGTCCTCGTGCTGCAAGATGTCCGACATCATGGCTGAAGGTGTTACCAtCGTGGAGGACATTACCAAGCGGAGAGAGCCGATCTCTAGTCTGGAGGCCATCTACCTCATCTCTCCTGTGCCAAAGTCAGTTCAGGCTCTGATCAGCGACTTCAAAGACTCGGCTTTCACGTACAAGGCTGCGCATATCTTCTTCACAGACACTTGTCCAGACGGACTTTTTGCTGAAATTGGGAGATCGAGAGTCTCGAAAGTCGTCAAGACACTGAAGGAAATTAACGTAGCTTTCTTACCGTACGAATCCCAGGTGTTTTCTCTGGATGATGCCAGTTCACTGCACTCTTTCTACAGTCCCACTAGGACGAACCTGGACGAGCAGACCAAAATGATGGAGGCCGTGGCTGAGCAGATTGCAACGCTGTGCGACACTCTGAAGGAATATCCGGCCATCCGTTACCGCCAGGGTCCAAAGGAGAATTTTGCGCTGGCTGAGATGGTGCTGGATCGCTTGAATGCACATAAAGCGGACAACCCGAGCATGGGAGAGGGAACGGATAAAGCGCGCTCCCAGCTGCTGATTGTGGACCGTGGCTATGACCCCATCTCTCCCATCCTGCACGAGCTCACCTTTCAGGCTATGGTCTACGACATGCTGGACATTGATCAGGACATCTACAGGTACGAAACGACGGGGCTCGGGGAAAACAAGATGAAGGAGGTTCTTCTAGACGAGGATGATGAGCTGTGGGTGCAGCTCAGACACATGCATATCGCTGATGTCACCAAGAAAGTGACCGAGCTGCTACGTACATTTTGTGAAAGTAAGAGGATGAACACAGATAAGgccAACCTCAAAGATCTGTCTCAGATGCTGAAGAAGATGCCACAGTACCAGAAAGAGCTGAGTCTGTACTCCACTCATCTGAACCTGGCTGACGCTTGCATGAAGAAATTCAAAGCCTCTCTGGATAAACTGTGTGAGGTGGAGCAGGATCTGGCCATGGGCTCCAACGCAGAGGGCGAGCCACTTAAAGACGCCATGAAGAACATCGTTCCCGTGCTGCTGAACGCAGAGATTCAGCCCTATGACAAAATACGCATCATTCTACTGTACATCTTCTACAAGAAAAAGGGCATTGCTGAAGAGAACCTCACAAAGCTCATCCAGCATGCTAACGTGCAGGAGAACAGCAACATCATCACCAACCTGCAGCACCTCGGCTGCCCCATCATCACCGGAGGTGCTAATGCTGGGAAATCTCTGCCAGAGAGGAAAGAACGGACCGGAGACACGTACCAGCTCTCCCGCTGGACCCCCATCCTCAAAGACGTCATGGAGAACATCATTGAGGACAAGCTGGACAGGAAGCAGTGGCCGTTCCTCTCGGATCCTGCACCCATCGCCACCACGCAGACTGTAGTGAGCAGTGCGCGGTTTGGACACTGGCACAAGAACAAGGCTGCGACGGAGTACCGCAGCGGCCCTCgactcatcatcttcatcatcggAGGAGTCACACACTCAGAGATGCGCTCGGCTTACGAAGTCACCCGCGCCACTGACGGCAAATGGGAGGTCCTGATTGGTTCGTCCCACATCATGACCCCAACCGGATTTCTGAACGATCTGAAGAAGCTGGATCAGCCATCTGCTTAGCAGTGAAGCCTCCACACTTGTGAAACTTCGCAAAAACCCATTACATGTGTACGATTTTCTGTTTAATCCCGAGTAGCAAACTGATGATTCACCGCCTTTTAAaaggtttcttctttttttaaaattttttttctggagaacacagtgtatatatgtttgtgatatttaaataatttaaaatgacatttattaaGATGCTGTAATTGGAAACAGAGCTGTTTGAAGTCTTGCAGGTCTACAGAGGTGTGCCAGCTTACTGCCCGCTAGCACAGACACTGGTGTAGAGAaaagctttacacacacacacacacacacacacacacacagttcccaAAAAACTCTCTGTGGCTTATAGACTGCCTCTGATAACTcctgttttattcttattttatccGTACAGTATGCTCAGATAAAGCATCTGCACTTTTAACAGggactccctctctctctctttctttctctctctctgtctctctctctctcttttttttttttttttaaaagtgcagttCATCTCTATAGCTTCTCCAGCTGTTGGGTGAAAGCTAGAAAACGCTGTATATTAACGTGATGGTGACGTCCTGCTgttcttgcttttctttcttttctttttcttttgcagtcTAGGCAGCGATGATGATTTTTGTTGATTCTAAACTGGTGCacttttctttatctttctttaaTGTTATCACAGAAGTTAGTTATTTACTtgggtagtttttttttttctttgtttttgttaaaacctAAATAAACTGCTTTATTCAAATCTTG
>XM_026946033.2
TAACACATGTATATTAACCGGAAGTCACAGCTGGACTTTTAGTGTCGCTTCCTTCACGCCGATCTGGAAATTTGACAACACGGAAGTGTCAAAATGGCTCCGAGTGGACTCAAAGCGGTGGTGGGAGAGAaaATCCTCAACGGAGTCCTGAAGAGTGTGAAGAAAGATGGGGAGTGGAAGgtgCTTATTGTTGATCACATGAGCATGCGGATTCTGTCCTCGTGCTGCAAGATGTCCGACATCATGGCTGAAGGTGTTACCAtCGTGGAGGACATTACCAAGCGGAGAGAGCCGATCTCTAGTCTGGAGGCCATCTACCTCATCTCTCCTGTGCCAAAGTCAGTTCAGGCTCTGATCAGCGACTTCAAAGACTCGGCTTTCACGTACAAGGCTGCGCATATCTTCTTCACAGACACTTGTCCAGACGGACTTTTTGCTGAAATTGGGAGATCGAGAGTCTCGAAAGTCGTCAAGACACTGAAGGAAATTAACGTAGCTTTCTTACCGTACGAATCCCAGGTGTTTTCTCTGGATGATGCCAGTTCACTGCACTCTTTCTACAGTCCCACTAGGACGAACCTGGACGAGCAGACCAAAATGATGGAGGCCGTGGCTGAGCAGATTGCAACGCTGTGCGACACTCTGAAGGAATATCCGGCCATCCGTTACCGCCAGGGTCCAAAGGAGAATTTTGCGCTGGCTGAGATGGTGCTGGATCGCTTGAATGCACATAAAGCGGACAACCCGAGCATGGGAGAGGGAACGGATAAAGCGCGCTCCCAGCTGCTGATTGTGGACCGTGGCTATGACCCCATCTCTCCCATCCTGCACGAGCTCACCTTTCAGGCTATGGTCTACGACATGCTGGACATTGATCAGGACATCTACAGGTACGAAACGACGGGGCTCGGGGAAAACAAGATGAAGGAGGTTCTTCTAGACGAGGATGATGAGCTGTGGGTGCAGCTCAGACACATGCATATCGCTGATGTCACCAAGAAAGTGACCGAGCTGCTACGTACATTTTGTGAAAGTAAGAGGATGAACACAGATAAGgccAACCTCAAAGATCTGTCTCAGATGCTGAAGAAGATGCCACAGTACCAGAAAGAGCTGAGTCTGTACTCCACTCATCTGAACCTGGCTGACGCTTGCATGAAGAAATTCAAAGCCTCTCTGGATAAACTGTGTGAGGTGGAGCAGGATCTGGCCATGGGCTCCAACGCAGAGGGCGAGCCACTTAAAGACGCCATGAAGAACATCGTTCCCGTGCTGCTGAACGCAGAGATTCAGCCCTATGACAAAATACGCATCATTCTACTGTACATCTTCTACAAGAAAAAGGGCATTGCTGAAGAGAACCTCACAAAGCTCATCCAGCATGCTAACGTGCAGGAGAACAGCAACATCATCACCAACCTGCAGCACCTCGGCTGCCCCATCATCACCGGAGGTGCTAATGCTGGGAAATCTCTGCCAGAGAGGAAAGAACGGACCGGAGACACGTACCAGCTCTCCCGCTGGACCCCCATCCTCAAAGACGTCATGGAGAACATCATTGAGGACAAGCTGGACAGGAAGCAGTGGCCGTTCCTCTCGGATCCTGCACCCATCGCCACCACGCAGACTGTAGTGAGTGCGCGGTTTGGACACTGGCACAAGAACAAGGCTGCGACGGAGTACCGCAGCGGCCCTCgactcatcatcttcatcatcggAGGAGTCACACACTCAGAGATGCGCTCGGCTTACGAAGTCACCCGCGCCACTGACGGCAAATGGGAGGTCCTGATTGGTTCGTCCCACATCATGACCCCAACCGGATTTCTGAACGATCTGAAGAAGCTGGATCAGCCATCTGCTTAGCAGTGAAGCCTCCACACTTGTGAAACTTCGCAAAAACCCATTACATGTGTACGATTTTCTGTTTAATCCCGAGTAGCAAACTGATGATTCACCGCCTTTTAAaaggtttcttctttttttaaaattttttttctggagaacacagtgtatatatgtttgtgatatttaaataatttaaaatgacatttattaaGATGCTGTAATTGGAAACAGAGCTGTTTGAAGTCTTGCAGGTCTACAGAGGTGTGCCAGCTTACTGCCCGCTAGCACAGACACTGGTGTAGAGAaaagctttacacacacacacacacacacacacacacacagttcccaAAAAACTCTCTGTGGCTTATAGACTGCCTCTGATAACTcctgttttattcttattttatccGTACAGTATGCTCAGATAAAGCATCTGCACTTTTAACAGggactccctctctctctctttctttctctctctctgtctctctctctctcttttttttttttttttaaaagtgcagttCATCTCTATAGCTTCTCCAGCTGTTGGGTGAAAGCTAGAAAACGCTGTATATTAACGTGATGGTGACGTCCTGCTgttcttgcttttctttcttttctttttcttttgcagtcTAGGCAGCGATGATGATTTTTGTTGATTCTAAACTGGTGCacttttctttatctttctttaaTGTTATCACAGAAGTTAGTTATTTACTtgggtagtttttttttttctttgtttttgttaaaacctAAATAAACTGCTTTATTCAAATCTTG

Function

symbol description
stxbp2 Predicted to enable syntaxin-1 binding activity and syntaxin-3 binding activity. Predicted to be involved in intracellular protein transport; neurotransmitter secretion; and vesicle docking involved in exocytosis. Predicted to act upstream of or within protein transport. Predicted to be active in plasma membrane and secretory granule. Is expressed in brain; epidermis; liver; periderm; and sensory system. Human ortholog(s) of this gene implicated in familial hemophagocytic lymphohistiocytosis 5. Orthologous to human STXBP2 (syntaxin binding protein 2).

NR:

description
syntaxin-binding protein 2-like isoform X2

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG:

id description
K15300 STXBP2, MUNC18-2; syntaxin-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU400698 False 286 lncRNA 0.34 2 4761313 4780328
XM_026946032.2 True 2645 mRNA 0.47 19 4763179 4780386
XM_026946033.2 False 2643 mRNA 0.47 19 4763178 4780386

Neighbor

gene id symbol gene type direction distance location
LOC113546190 LOC108257430 coding upstream 149713 4599150 ~ 4611600 (+)
atp13a1 atp13a1 coding upstream 163880 4575616 ~ 4597433 (+)
lmx1al lmx1al,LOC108256788,LOC108429662,LOC107672514,LOC107670451,LOC103034908,LOC100696700 coding upstream 196032 4528819 ~ 4565281 (+)
gmip gmip coding upstream 237213 4498517 ~ 4524100 (+)
colgalt1a LOC108257422,LOC108429625,LOC107757371,LOC107670492,LOC107672476,LOC107711180,LOC107567242 coding upstream 266867 4477813 ~ 4494446 (+)
xab2 xab2,LOC102796593 coding downstream 905 4781291 ~ 4794558 (+)
camsap3 camsap3 coding downstream 17955 4798341 ~ 4840522 (+)
LOC113546287 rdh8,LOC108257005,LOC108429652,LOC105905727,LOC107563320 coding downstream 97009 4877395 ~ 4887345 (+)
col5a3a col5a3,LOC107587984,LOC107757338 coding downstream 234444 5014830 ~ 5096273 (+)
olfm2a olfm2,olfm2a,LOC107563315 coding downstream 362840 5143226 ~ 5254263 (+)
G338246 NA non-coding upstream 30208 4718197 ~ 4731105 (+)
G338252 NA non-coding upstream 81688 4677517 ~ 4679625 (+)
G338164 NA non-coding upstream 391102 4339204 ~ 4370211 (+)
G338147 NA non-coding upstream 434818 4326052 ~ 4326495 (+)
G338116 NA non-coding upstream 492858 4268246 ~ 4268455 (+)
G338658 NA non-coding downstream 460939 5241325 ~ 5241584 (+)
LOC117595846 NA non-coding downstream 596820 5377206 ~ 5386152 (+)
G338683 NA non-coding downstream 607602 5387988 ~ 5392192 (+)
G338799 NA non-coding downstream 651463 5431849 ~ 5432264 (+)
G338814 dnmt1 non-coding downstream 744654 5525040 ~ 5526609 (+)
brd4 LOC108257120,LOC108429657 other upstream 8644 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 93057 4616324 ~ 4668256 (+)
G338163 NA other upstream 406284 4352522 ~ 4355029 (+)
rsad1 rsad1 other upstream 436277 4307922 ~ 4325036 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 2368776 2358116 ~ 2392537 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 1553603 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 1824219 6604605 ~ 6616023 (+)
G339324 NA other downstream 1930629 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 3460311 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 3502574 8282960 ~ 8285204 (+)

Expression


Co-expression Network