LOC113546199 (pet100,LOC107672445,LOC107563330,LOC107587949)


Basic Information

Item Value
gene id LOC113546199
gene name pet100,LOC107672445,LOC107563330,LOC107587949
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4757814 ~ 4762602 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU400720
GGAAACAACCCGGAAGTTGTAAATGTTGAGTGCTTAGGTGACCCTCAGCGGTGAGAAAACATGGGAgtgaaaatagaaatatttcgGATGATGGTGTATCTGTCCTTTCCGGTGGCCATGTTTTGGATTTCCAACCAGGCAGAATACTTCGAGGAGTACATTGTGAAGAGAAAGaGAGAGATTTTTCCACCAGATGAGAAAATGCAGaGGAAAGAGCTCGAGGAGTTTAAGGAGCGCATGAGAATCAGGAAAGAGCAGAAGATGCTGAAACAGTTGGCCATGGAGACCGAAGACTGATCACGAGAGAAGGACCGAACGTCTCAGTTTCGCTGATCTAAAGACCAAAGCGAtgctccagagagagagagtgagagagagagacagactgtgtCGAGGGTTAAACGTGCTGAGGCATGTACATGGAGTGTATTTTGTGAAAAGACAGAGGAAATGTACAGTTTTGTAAATATAAGTGCATTCATAATATTGAATCAGTGCAAATTCTGAGGTTTGAACATCAGAACATTCAGCATTTTAAGACTCTGTCCTGTTTGCTGGGTAAtgggttatttattttttaaaataaaaaatacattgatttttttccttcttaacATCTTTGCACcatgttcattttcattcatgtgTGTTCACTTACTGTATAATGAATTGGATAAAAGCTTCAGAGAATATCTGACCTGGAGTTTGTAGATTTGTagctaagagctgctgctgtaatcataaagactctcctgtgctcatcccaggattcACAGTCTGCtcatcttttcaacacactcagtactttttgtctttactcttctgtacttgtacagtgtaatgatttataatccctcTATCCGCGGTCAtggagaagaggatgagttccctttcgAGTCTGGATCCTCTCCAGGTTTTCTCTTCGTGTCATCATCATTGCCACACTCACCTCGGTTTTGTTCATTAGAGATTTAACCTACATCCACaattctataaagctgctttatgagaATTTCTATTCTTAAGactgctgtacaaataaaatggaaatgtatttaTACAGGTTTGTATGTGACTGTGCAGAATGAACCAAGCTCCAATGCAGTTTCCAGACTATGTATAAATATCTGAAGTGAATTTAAATTCAAAGAATGTGGAGACGCATAAAGGATTGATAACCATAAGATCCTGGAtattaaggctgttttttttgtgctacaGTGGACTATGGTAgctaaaaaggacaaaaaataaataaaattagaaagtGTGTAGTCAGTGTATGCTAGTGCACTGACATATAGACGTGTTACTAGATCACTGTTTCTCAGATAGAGTACGCACATCCTGGGGTACCTGGAGATACTACAGTATGTTCATTAACTTTATTCTGATGATATTCAGATTATTACTGTTTACCACAGca
>XM_026945962.2
GCttttaatttgaaacaaaacCCAACCCAAAACAAAAACGGGAAACAACCCGGAAGTTGTAAATGTTGAGTGCTTAGGTGACCCTCAGCGGTGAGAAAACATGGGAgtgaaaatagaaatatttcgGATGATGGTGTATCTGTCCTTTCCGGTGGCCATGTTTTGGATTTCCAACCAGGCAGAATACTTCGAGGAGTACATTGTGAAGAGAAAGaGAGAGATTTTTCCACCAGATGAGAAAATGCAGaGGAAAGAGCTCGAGGAGTTTAAGGAGCGCATGAGAATCAGGAAAGAGCAGAAGATGCTGAAACAGTTGGCCATGGAGACCGAAGACTGATCACGAGAGAAGGACCGAACGTCTCAGTTTCGCTGATCTAAAGACCAAAGCGAtgctccagagagagagagtgagagagagagacagactgtgtCGAGGGTTAAACGTGCTGAGGCATGTACATGGAGTGTATTTTGTGAAAAGACAGAGGAAATGTACAGTTTTGTAAATATAAGTGCATTCATAATATTGAATCAGTGCAAATTCTGAGGTTTGAACATCAGAACATTCAGCATTTTAAGACTCTGTCCTGTTTGCTGGGTAAtgggttatttattttttaaaataaaaaatacattgatttttttccttcttaacATCTTTGCACcatgttcattttcattcatgtgTGTTCACTTACTGTATAATGAATTGGATAAAAGCTTCAGAGAATATCTGACCTGGAGTTTGTAGATTTGTagctaagagctgctgctgtaatcataaagactctcctgtgctcatcccaggattcACAGTCTGCtcatcttttcaacacactcagtactttttgtctttactcttctgtacttgtacagtgtaatgatttataatccctcTATCCGCGGTCAtggagaagaggatgagttccctttcgAGTCTGGATCCTCTCCAGGTTTTCTCTTCGTGTCATCATCATTGCCACACTCACCTCGGTTTTGTTCATTAGAGATTTAACCTACATCCACaattctataaagctgctttatgagaATTTCTATTCTTAAGactgctgtacaaataaaatggaaatgtattta

Function

symbol description
pet100 Predicted to enable unfolded protein binding activity. Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrion. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human PET100 (PET100 cytochrome c oxidase chaperone).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU400720 True 1426 lncRNA 0.39 4 4757854 4762602
XM_026945962.2 False 1098 mRNA 0.40 4 4757814 4762234

Neighbor

gene id symbol gene type direction distance location
LOC113546190 LOC108257430 coding upstream 146214 4599150 ~ 4611600 (+)
atp13a1 atp13a1 coding upstream 160381 4575616 ~ 4597433 (+)
lmx1al lmx1al,LOC108256788,LOC108429662,LOC107672514,LOC107670451,LOC103034908,LOC100696700 coding upstream 192533 4528819 ~ 4565281 (+)
gmip gmip coding upstream 233714 4498517 ~ 4524100 (+)
colgalt1a LOC108257422,LOC108429625,LOC107757371,LOC107670492,LOC107672476,LOC107711180,LOC107567242 coding upstream 263368 4477813 ~ 4494446 (+)
xab2 xab2,LOC102796593 coding downstream 18689 4781291 ~ 4794558 (+)
camsap3 camsap3 coding downstream 35739 4798341 ~ 4840522 (+)
LOC113546287 rdh8,LOC108257005,LOC108429652,LOC105905727,LOC107563320 coding downstream 114793 4877395 ~ 4887345 (+)
col5a3a col5a3,LOC107587984,LOC107757338 coding downstream 252228 5014830 ~ 5096273 (+)
olfm2a olfm2,olfm2a,LOC107563315 coding downstream 380624 5143226 ~ 5254263 (+)
G338246 NA non-coding upstream 26709 4718197 ~ 4731105 (+)
G338252 NA non-coding upstream 78189 4677517 ~ 4679625 (+)
G338164 NA non-coding upstream 387603 4339204 ~ 4370211 (+)
G338147 NA non-coding upstream 431319 4326052 ~ 4326495 (+)
G338116 NA non-coding upstream 489359 4268246 ~ 4268455 (+)
G338658 NA non-coding downstream 478723 5241325 ~ 5241584 (+)
LOC117595846 NA non-coding downstream 614604 5377206 ~ 5386152 (+)
G338683 NA non-coding downstream 625386 5387988 ~ 5392192 (+)
G338799 NA non-coding downstream 669247 5431849 ~ 5432264 (+)
G338814 dnmt1 non-coding downstream 762438 5525040 ~ 5526609 (+)
brd4 LOC108257120,LOC108429657 other upstream 5145 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 89558 4616324 ~ 4668256 (+)
G338163 NA other upstream 402785 4352522 ~ 4355029 (+)
rsad1 rsad1 other upstream 432778 4307922 ~ 4325036 (+)
LOC113546300 LOC108280069,LOC108261210,LOC108257281,LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289 other upstream 2365277 2358116 ~ 2392537 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 1571387 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 1842003 6604605 ~ 6616023 (+)
G339324 NA other downstream 1948413 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 3478095 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 3520358 8282960 ~ 8285204 (+)

Expression


Co-expression Network