G338814 (dnmt1)


Basic Information

Item Value
gene id G338814
gene name dnmt1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5525040 ~ 5526609 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU401352
GGTGTTCTGTTGTTATCAGAGCTGTACCTGCTTGCCCATGGGCTCAGGGTTGGTAACGGTTGTGCTGAAGAATCCGTCCCACTCCAGCCTGCCATACAGTCCGGCCCAGTGGTTATGACGATTACCCGTGTGAGGCAAACACCACGGGATCAGTGTGTTGAACTGCCTGTCTGCTGGGTCACATGGTTTACCTCCAGCACAAGTACACACTCCTCTCAGCGCACCAGTGCTACTTCGGCCGTTTTTCTTGTCCGAGTGTGTGTACCGAAGCTTCTTTGTTGTGGTTCCGTCCCGTAGTCGCACCTCGATGTTGGGCAGGTCTCTCCAGTCAGAGCCTGGTGCTAGGGGGATGTGACGCATGCGCGCTTCCACCAGGGCGCTCATGTCCTTGCAGATATGGTCCCTGAGAATGGGCTGGTATTGTGCACCCCGAATGTGTCTCTGGAACCAGGATTGTGGCTCGCCGTTGTAAGAAATCTCTAGAGCAGAGGCTCCGTTACGGATCTCTGGGAGGTCAGACATGGTGTCCCGGACTGTAATGGTTCGATAGATACCGCCATTCCCTCTGCGGAAGAACAACATTAGTACACAAACTAACAAAacaatctgattaaaaaaagttagtAACTGAAGTAGTTACCTAGTTACGTTGGAGACGTATTTTTTGTCATCAA

Function

symbol description
dnmt1 Enables DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates. Involved in negative regulation of gene expression. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and macromolecule methylation. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and tail bud. Human ortholog(s) of this gene implicated in Graves' disease; autosomal dominant cerebellar ataxia, deafness and narcolepsy; hereditary sensory neuropathy; hereditary sensory neuropathy type 1E; and lung non-small cell carcinoma. Orthologous to human DNMT1 (DNA methyltransferase 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU401352 True 674 lncRNA 0.51 3 5525040 5526609

Neighbor

gene id symbol gene type direction distance location
eif3g eif3g,LOC107711270,LOC107672439,LOC107754044 coding upstream 4493 5513096 ~ 5520547 (+)
LOC113536275 LOC108257203,LOC108257204,LOC108256855,LOC108257206,LOC108257209,LOC108257205,LOC108261875,LOC108257208 coding upstream 13838 5473942 ~ 5511202 (+)
LOC113535910 LOC108257332,LOC108257205,LOC108261620 coding upstream 13838 5502234 ~ 5511202 (+)
LOC113536250 LOC108257204,LOC108257207,LOC108257205,LOC108257203,LOC108257206,LOC108257209,LOC108256855,LOC108261875,LOC108261620 coding upstream 52929 5470562 ~ 5472111 (+)
LOC113536209 LOC108257204,LOC108257205,LOC108257203,LOC108257207,LOC108257206,LOC108256855,LOC108257209,LOC108261875,LOC108261620 coding upstream 57679 5463055 ~ 5467361 (+)
LOC113535991 NA coding downstream 105718 5632327 ~ 5658199 (+)
oxsm oxsm,LOC107655122,LOC107694752,LOC107557465,LOC107566624 coding downstream 138563 5665172 ~ 5669016 (+)
cfap20 cfap20,cp080 coding downstream 143083 5669692 ~ 5674191 (+)
zgc:63863 LOC108256764,LOC108429636,LOC107694745,LOC107566628 coding downstream 178062 5704671 ~ 5726395 (+)
slc39a4 slc39a4 coding downstream 401097 5927706 ~ 5944224 (+)
G338799 NA non-coding upstream 92776 5431849 ~ 5432264 (+)
G338683 NA non-coding upstream 132848 5387988 ~ 5392192 (+)
LOC117595846 NA non-coding upstream 138888 5377206 ~ 5386152 (+)
G338658 NA non-coding upstream 283456 5241325 ~ 5241584 (+)
G338246 NA non-coding upstream 793935 4718197 ~ 4731105 (+)
G338842 NA non-coding downstream 200569 5727178 ~ 5728306 (+)
G338961 NA non-coding downstream 328049 5854658 ~ 5855430 (+)
LOC113536203 NA non-coding downstream 449263 5975872 ~ 5981732 (+)
G339055 NA non-coding downstream 461202 5987811 ~ 5988492 (+)
G339126 NA non-coding downstream 590140 6116749 ~ 6128284 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 744654 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 762438 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 772371 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 856784 4616324 ~ 4668256 (+)
G338163 NA other upstream 1170011 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 807380 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 1077996 6604605 ~ 6616023 (+)
G339324 NA other downstream 1184406 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2714088 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 2756351 8282960 ~ 8285204 (+)

Expression


Co-expression Network