G338842


Basic Information

Item Value
gene id G338842
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5727178 ~ 5728306 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU401392
AGTGGATGAAATATGAATAACGGGATGTGCATGTGCACCTGTAGAACCATGTGTAAAAATTGGAGGGAAAACAACCTGAACATTTGGATGCATTATGAACGGTAATCAAGCAACGGAAATGCAATCAATTTTATGATTATTGCAGGTGTAGAGGGCACTTTGAGGGAACATGCACTTCATACGTTATAATTTGTTGAGGATATTTTACACAGATtctgttattactgtttacCATCTTCCTAATTAGTGTCTGAATGGTGGATGTTGTAGTTCTCTTTACTTACTATGGTAAAGAGGTGCAGACTGCACATCTGTACTAGTACATGTATAAACCCCTTGGATATCCCTGCGACTGAATCCTGGAAAACAGCAAAGACAAAAACTCAGGTTTGGACTGACAGCTAggagaaaccataaatatatctCACCACAATGAcaaggaaatgtttttatttacattttaatcctGTCTAGGCTTTCTGCAGAGATCATGTCGGGTAAAGAGCCAGATTAACAAACACAGCGGTAAAAAaatcagtctgcctaaagatgtctaaaaccttgctctCTAAgtctgatttcctcacacagtgaatatcacactttgatcaagttgttggattcAGTTTAAAGTCAGATACTGACTGTCAAAGTGTCCACAGTGCTCCTCCACTGCAGTTAGAATGCAGtcttttaaatacaattttttttcccttttcactttttcaccaGATTTTAAAGTGCtcgagatacatgcaaaagagtcacacatttcagttcagtttttggAACTATATATAGGACTCTCGTGCCGTGTGAGGTTTTGGATAAATGTGCACCTTTTtcatgtaagttttttttttttttttttttaaacgtactGTATTTGGACGGTATTTCTTACCACTACGATTTTAATGTTTGGATTGATTCGTTCAAATTCAAACCACATAGTCTATGAACAAatatatgaacaaaaaatgtttttttcttcaatatgtCATAgttatgtttgtttattgatgTTTCCTAGAGGGGATATCGCAATATGCTCCGATTCAATCTGAGCTGCTTGTACTGTTAAACTATGAGAATATTTTTGGAAGAGAATGGGTCATTTGAATtctca
>TU401393
AGTGGATGAAATATGAATAACGGGATGTGCATGTGCACCTGTAGAACCATGTGTAAAAATTGGAGGGAAAACAACCTGAACATTTGGATGCATTATGAACGGTAATCAAGCAACGGAAATGCAATCAATTTTATGATTATTGCAGGTGTAGAGGGCACTTTGAGGGAACATGCACTTCATACGTTATAATTTGTTGAGGATATTTTACACAGATtctgttattactgtttacCATCTTCCTAATTAGTGTCTGAATGGTGGATGTTGTAGTTCTCTTTACTTACTATGGTAAAGAGGTGCAGACTGCACATCTGTACTAGTACATGTATAAACCCCTTGGATATCCCTGCGACTGAATCCTGGAAAACAGCAAAGACAAAAACTCAGGTTTGGACTGACAGCTAggagaaaccataaatatatctCACCACAATGAcaaggaaatgtttttatttacattttaatcctGTCTAGGCTTTCTGCAGAGATCATGTCGGGTAAAGAGCCAGATTAACAAACACAGCGGTAAAAAaatcagtctgcctaaagatgtctaaaaccttgctctCTAAgtctgatttcctcacacagtgaatatcacactttgatcaagttgttggattcAGTTTAAAGTCAGATACTGACTGTCAAAGTGTCCACAGTGCTCCTCCACTGCAGTTAGAATGCAGtcttttaaatacaattttttttcccttttcactttttcaccaGATTTTAAAGTGCtcgagatacatgcaaaagagtcacacatttcagttcagtttttggAACTATATATAGGACTCTCGTGCCGTGTGAGGTTTTGGATAAATGTGCACCTTTTt

Function

GO:

id name namespace
GO:0019205 nucleobase-containing compound kinase activity molecular_function

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU401392 True 1129 lncRNA 0.36 1 5727178 5728306
TU401393 False 845 lncRNA 0.38 1 5727178 5728022

Neighbor

gene id symbol gene type direction distance location
zgc:63863 LOC108256764,LOC108429636,LOC107694745,LOC107566628 coding upstream 783 5704671 ~ 5726395 (+)
cfap20 cfap20,cp080 coding upstream 52987 5669692 ~ 5674191 (+)
oxsm oxsm,LOC107655122,LOC107694752,LOC107557465,LOC107566624 coding upstream 58162 5665172 ~ 5669016 (+)
LOC113535991 NA coding upstream 68979 5632327 ~ 5658199 (+)
eif3g eif3g,LOC107711270,LOC107672439,LOC107754044 coding upstream 206631 5513096 ~ 5520547 (+)
slc39a4 slc39a4 coding downstream 199400 5927706 ~ 5944224 (+)
LOC113536255 NA coding downstream 372240 6100546 ~ 6109043 (+)
LOC113536325 NA coding downstream 383795 6112101 ~ 6116707 (+)
cdca7b cdca7l coding downstream 459863 6188169 ~ 6197615 (+)
sp8a LOC108257401 coding downstream 544641 6272947 ~ 6275012 (+)
G338814 dnmt1 non-coding upstream 200569 5525040 ~ 5526609 (+)
G338799 NA non-coding upstream 294914 5431849 ~ 5432264 (+)
G338683 NA non-coding upstream 334986 5387988 ~ 5392192 (+)
LOC117595846 NA non-coding upstream 341026 5377206 ~ 5386152 (+)
G338658 NA non-coding upstream 485594 5241325 ~ 5241584 (+)
G338961 NA non-coding downstream 126352 5854658 ~ 5855430 (+)
LOC113536203 NA non-coding downstream 247566 5975872 ~ 5981732 (+)
G339055 NA non-coding downstream 259505 5987811 ~ 5988492 (+)
G339126 NA non-coding downstream 388443 6116749 ~ 6128284 (+)
G339159 LOC108256777 non-coding downstream 446015 6174321 ~ 6175597 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 946792 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 964576 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 974509 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 1058922 4616324 ~ 4668256 (+)
G338163 NA other upstream 1372149 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 605683 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 876299 6604605 ~ 6616023 (+)
G339324 NA other downstream 982709 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2512391 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 2554654 8282960 ~ 8285204 (+)

Expression


Co-expression Network