G339055


Basic Information

Item Value
gene id G339055
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5987811 ~ 5988492 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU401647
TTGCTGTAAAAATGCATATTATAGAAAAGTTGTATgtggtttctatagcaacgaaggaaaacacacaaaagggAACCATATTGCTTTGCATTTTGCGTTTTTTGatacataaataatacagagcttatctatttatatttatgattgcGGTTTTCATCTTCGTGTGTCGGTGTGTTTACCACATGCAAACCAGCTGACATGGtgtgaaaaaattaaacagcaaCAAAATACAATAAGCCTTTAAAACAGTTCCCCCCAACACTTGATGAGTCGAGTCACCTCTTTTCACCAGGTTACTGCAAAAAAAACGTACAATTTagcatattaaaatattacagtatagttttatatatatatatatatatatataactggaGATTTGTACAAATGATACTCTGTTATCATCCTTCGTCaaacataaataacaaaacaaaataataaataattataataacaatgCCTCAGTCCTGTAACGGCATAAAAATGTCAGTAAGAAATGTGCGGTGTTTATTTATTCGAGccaaaaatactgtaaaagattcatggctttctttctttttatttattttatttttaaatcatactcCTCTCAAAAGAGTGTCAGTgttgaatttaaatattttcagtgaTCCCTTTAAGAGTCCAGCCAGCGGAGGGCATTAAAAATGAGACAAATGGACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU401647 True 682 lncRNA 0.31 1 5987811 5988492

Neighbor

gene id symbol gene type direction distance location
slc39a4 slc39a4 coding upstream 43587 5927706 ~ 5944224 (+)
zgc:63863 LOC108256764,LOC108429636,LOC107694745,LOC107566628 coding upstream 261416 5704671 ~ 5726395 (+)
cfap20 cfap20,cp080 coding upstream 313620 5669692 ~ 5674191 (+)
oxsm oxsm,LOC107655122,LOC107694752,LOC107557465,LOC107566624 coding upstream 318795 5665172 ~ 5669016 (+)
LOC113535991 NA coding upstream 329612 5632327 ~ 5658199 (+)
LOC113536255 NA coding downstream 112054 6100546 ~ 6109043 (+)
LOC113536325 NA coding downstream 123609 6112101 ~ 6116707 (+)
cdca7b cdca7l coding downstream 199677 6188169 ~ 6197615 (+)
sp8a LOC108257401 coding downstream 284455 6272947 ~ 6275012 (+)
polr1f twistnb coding downstream 356979 6345471 ~ 6350729 (+)
LOC113536203 NA non-coding upstream 6079 5975872 ~ 5981732 (+)
G338961 NA non-coding upstream 132381 5854658 ~ 5855430 (+)
G338842 NA non-coding upstream 259505 5727178 ~ 5728306 (+)
G338814 dnmt1 non-coding upstream 461202 5525040 ~ 5526609 (+)
G338799 NA non-coding upstream 555547 5431849 ~ 5432264 (+)
G339126 NA non-coding downstream 128257 6116749 ~ 6128284 (+)
G339159 LOC108256777 non-coding downstream 185829 6174321 ~ 6175597 (+)
G339167 NA non-coding downstream 212001 6200493 ~ 6201623 (+)
LOC117595885 NA non-coding downstream 324993 6313485 ~ 6319774 (+)
G339275 NA non-coding downstream 485990 6474482 ~ 6526317 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1207425 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1225209 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1235142 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 1319555 4616324 ~ 4668256 (+)
G338163 NA other upstream 1632782 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 345497 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 616113 6604605 ~ 6616023 (+)
G339324 NA other downstream 722523 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2252205 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 2294468 8282960 ~ 8285204 (+)

Expression


Co-expression Network