G339167


Basic Information

Item Value
gene id G339167
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6200493 ~ 6201623 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU401777
cccagctgtagcacgcactactcgaggtaccaacaaatagcctgcaccttttgatctgagtaggtgtggcggatcataaaagaccaaaagttgactcaggtactgtggcgcgagaccatttagtgctttataggtcaatagtagtattttataatcaatacgaaatttgattgggagccaatgcagtgtggataaagaaagactagagtcgataatcacatcaaggtcttttactgctgcacatgatgaaacagaaaggccatccagagttattatgtaatcagaaagcttacttctaactgcatgtggtcctggtacaagtacttctgtcttgtcagaattaagtaagagaaagttaaaaagcatccagtttctaatgtcttttacacattcctcattaagctggtgtctgtcatctggctttgctgaaacatacaactgtgagTCATCAGTGtagcagtggaagctaataccatgtttacagataattttgcccagaggtagcatatataaagaaaagagcagtgggcctaaaacagaaccttgtggaacaccaaactttaccttagtatgagaagagaagtcaccatttacgtttacaaactgataacgatcagtcaaataagacctgagccaggaaagggccgttcccttaatgcctactacattttccagtctaccgaggagaatagcatgatcaatggtatcaaaagctgcactaaggtcaagcagcacaagcaaggagacacaaccctgatcagaggccagtagtaggtcatttacaacttttaccagtgctgtctctgtgctatgatgaggcctaaatcctgggCCTAGCTAGGCCTAGCTAATCTCACGTGCCGAAAGAtagtctcctataaccagagctctttcaggtttctcagcgggtgcttcactgaggagagcaaacctgttagacacgtgaagcggagaggagtggtgctcccgtgggcgagccttagcgttagctttggctttgcgattatgccgccgagtcgtcacccgcttcgccccgctgtgagggctctaatgctggagttgggggattgctaactccacctaaggcatccagactttcccctacagaaactacgctgctctcactctcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU401777 True 1131 lncRNA 0.45 1 6200493 6201623

Neighbor

gene id symbol gene type direction distance location
cdca7b cdca7l coding upstream 2878 6188169 ~ 6197615 (+)
LOC113536325 NA coding upstream 83786 6112101 ~ 6116707 (+)
LOC113536255 NA coding upstream 91450 6100546 ~ 6109043 (+)
slc39a4 slc39a4 coding upstream 256269 5927706 ~ 5944224 (+)
zgc:63863 LOC108256764,LOC108429636,LOC107694745,LOC107566628 coding upstream 474098 5704671 ~ 5726395 (+)
sp8a LOC108257401 coding downstream 71324 6272947 ~ 6275012 (+)
polr1f twistnb coding downstream 143848 6345471 ~ 6350729 (+)
LOC113536247 ferd3l,LOC102791589 coding downstream 178537 6380160 ~ 6381337 (+)
twist1a twist1,twist1a,LOC108257132,LOC107755947,LOC107709721,LOC107667574 coding downstream 182578 6384201 ~ 6385680 (+)
snx13 snx13 coding downstream 275700 6477323 ~ 6524126 (+)
G339159 LOC108256777 non-coding upstream 24896 6174321 ~ 6175597 (+)
G339126 NA non-coding upstream 72209 6116749 ~ 6128284 (+)
G339055 NA non-coding upstream 212001 5987811 ~ 5988492 (+)
LOC113536203 NA non-coding upstream 218761 5975872 ~ 5981732 (+)
G338961 NA non-coding upstream 345063 5854658 ~ 5855430 (+)
LOC117595885 NA non-coding downstream 111862 6313485 ~ 6319774 (+)
G339275 NA non-coding downstream 272859 6474482 ~ 6526317 (+)
LOC117595843 NA non-coding downstream 292014 6493637 ~ 6494246 (+)
LOC117595844 NA non-coding downstream 292978 6494601 ~ 6497743 (+)
G339279 NA non-coding downstream 324772 6526395 ~ 6527094 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1420107 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1437891 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1447824 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 1532237 4616324 ~ 4668256 (+)
G338163 NA other upstream 1845464 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 132366 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 402982 6604605 ~ 6616023 (+)
G339324 NA other downstream 509392 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2039074 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 2081337 8282960 ~ 8285204 (+)

Expression


Co-expression Network