LOC113535938 (tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099)


Basic Information

Item Value
gene id LOC113535938
gene name tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6333989 ~ 6343909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU401842
AAAATCTTTGTCGCGAGCTAGATAGTGGTAACACACTAGCTACAATATAGATCAGAAGATAAAAGAACATAGATGATCCTGTTCTCAGCGTGCTGCATTTGCGGCCTGATCGGAGGAATCCTGAACTTCCAGTTTGTGCGGGCACTGGTGAAGCGTCCTGACGCGGTGCGTTCGCTGCACATGGCCGCCATGTCTCTGGCCTGCCTGGGGATCAGCAGCTGCACCCTGTCCACGTGGCTGACGTGCCGGCTGGCCAGCAACGAGCAGCAGCGCATGTTCCTGGAGCGCGAACACTCGCTGCATCACTCGCACGAGATGGCTGAGAAGGTAGAGGAGGAACGTAGGAGAGGAGAGCACAGTCCGGGTGTTTCACAGTGTCTCAGTgaagtaatggATAACTCCAGCAATGGCATCCCACAAATCACATACAACGGTCGGAGCGCATCACCGTGACAAACTTGGGTCTCACTTTGATGACTTTGCACTCTCGTTAGGAATGATGTTACGGGGCTGATGGCCATCTGTAGGACATTTCCTGCACACAGCAGGCCCTAGGATACTTAATGCtactgtggcaaaaaaaaaaaggggagagaTGATCTCTGTGGATTGAGCACCAATCAGCATTCAGGGACGTGATGCCTCAGGAGTGTTCATTAGTGAGTACAGAGCATTGTATCAGTAAGCACAGAACATGCATGTAAACTTGACTTCCTTACTCTCTCATATTATCCCTCTCCCTTCCTTAATGCATTCCTCCTGCATCTCTCCATTATTCCTTCTGATTATGGGTTATGGGAATGATGAATCTGTCTCTGAATTTCTTATGTATGGCATATTGAATGCTCGGAcctcaaatatacaaaatgcacAATGTAAAATGCTTGAACAAGAgaataatttattgatttacagtatttttatataaa
>XM_026929527.2
CCCTCCTCAGTGGAGCAGCGCGTGCACGGAGAAGGCGGCTTCATTTGGAGCAGAGATGCGCTCAGCGGTACTGTGTACAGGAGCTCTAGAGGAGTgatatacacacttacactctacAGGAGCTCTACATGAGTGATCTGCACACTCATACTCCATAGGAGGTCTACAGAAGTGAtctgcacactcacactctaCAGGACTTCTACAGGAGTGAGCGCAGAGTGAGTAGGGGAAGAAGTATGGATTAAGGAGGGCCAAGCCCGAAGCGGACCGCACTGCTCCGGAGCTGCGGGAAGGATGCCCGAGCGAGGATGTGCAGCAGCCGGAAGATCGTCTGCAGTCTGCTGGTGCTGTCCGTGCTGCAGGTGGGGCTCGGCGCGGCCAGCATCGCGCTCGGAGCCGTGGCCCTCAGCAGAGCGCGAAACGAGCACAAGACGCAGCAGGGTCATGCGTCCCCGGTGTGGAGCGGGTTCCTTGTCTGTGGGCTCTGTGGGATGCTGTGTGCGAGAAAAAGGACTGGTCTGGTTATGATCCTGTTCTCAGCGTGCTGCATTTGCGGCCTGATCGGAGGAATCCTGAACTTCCAGTTTGTGCGGGCACTGGTGAAGCGTCCTGACGCGGTGCGTTCGCTGCACATGGCCGCCATGTCTCTGGCCTGCCTGGGGATCAGCAGCTGCACCCTGTCCACGTGGCTGACGTGCCGGCTGGCCAGCAACGAGCAGCAGCGCATGTTCCTGGAGCGCGAACACTCGCTGCATCACTCGCACGAGATGGCTGAGAAGGTAGAGGAGGAACGTAGGAGAGGAGAGCACAGTCCGGGTGTTTCACAGTGTCTCAGTgaagtaatggATAACTCCAGCAATGGCATCCCACAAATCACATACAACGGTCGGAGCGCATCACCGTGACAAACTTGGGTCTCACTTTGATGACTTTGCACTCTCGTTAGGAATGATGTTACGGGGCTGATGGCCATCTGTAGGACATTTCCTGCACACAGCAGGCCCTAGGATACTTAATGCtactgtggcaaaaaaaaaaaggggagagaTGATCTCTGTGGATTGAGCACCAATCAGCATTCAGGGACGTGATGCCTCAGGAGTGTTCATTAGTGAGTACAGAGCATTGTATCAGTAAGCACAGAACATGCATGTAAACTTGACTTCCTTACTCTCTCATATTATCCCTCTCCCTTCCTTAATGCATTCCTCCTGCATCTCTCCATTATTCCTTCTGATTATGGGTTATGGGAATGATGAATCTGTCTCTGAATTTCTTATGTATGGCATATTGAATGCTCGGAcctcaaatatacaaaatgcacAATGTAAAATGCTTGAACAAGAgaataatttattgatttacagtatttttatataaaggcttcatataaaaatgaaataaaaagactGAAATGCA
>XM_026929528.2
CCCTCCTCAGTGGAGCAGCGCGTGCACGGAGAAGGCGGCTTCATTTGGAGCAGAGATGCGCTCAGCGGTACTGTGTACAGGAGCTCTAGAGGAGTgatatacacacttacactctacAGGAGCTCTACATGAGTGATCTGCACACTCATACTCCATAGGAGGTCTACAGAAGTGAtctgcacactcacactctaCAGGACTTCTACAGGAGTGAGCGCAGAGTGAGTAGGGGAAGAAGTATGGATTAAGGAGGGCCAAGCCCGAAGCGGACCGCACTGCTCCGGAGCTGCGGGAAGGATGCCCGAGCGAGGATGTGCAGCAGCCGGAAGATCGTCTGCAGTCTGCTGGTGCTGTCCGTGCTGCAGGTGGGGCTCGGCGCGGCCAGCATCGCGCTCGGAGCCGTGGCCCTCAGCAGAGCGCGAAACGAGCACAAGACGCAGCAGGGTCATGCGTCCCCGGTGTGGAGCGGGGTGTGTTTCCTTGTCTGTGGGCTCTGTGGGATGCTGTGTGCGAGAAAAAGGACTGGTCTGGTTATGATCCTGTTCTCAGCGTGCTGCATTTGCGGCCTGATCGGAGGAATCCTGAACTTCCAGTTTGTGCGGGCACTGGTGAAGCGTCCTGACGCGGTGCGTTCGCTGCACATGGCCGCCATGTCTCTGGCCTGCCTGGGGATCAGCAGCTGCACCCTGTCCACGTGGCTGACGTGCCGGCTGGCCAGCAACGAGCAGCAGCGCATGTTCCTGGAGCGCGAACACTCGCTGCATCACTCGCACGAGATGGCTGAGAAGgaagtaatggATAACTCCAGCAATGGCATCCCACAAATCACATACAACGGTCGGAGCGCATCACCGTGACAAACTTGGGTCTCACTTTGATGACTTTGCACTCTCGTTAGGAATGATGTTACGGGGCTGATGGCCATCTGTAGGACATTTCCTGCACACAGCAGGCCCTAGGATACTTAATGCtactgtggcaaaaaaaaaaaggggagagaTGATCTCTGTGGATTGAGCACCAATCAGCATTCAGGGACGTGATGCCTCAGGAGTGTTCATTAGTGAGTACAGAGCATTGTATCAGTAAGCACAGAACATGCATGTAAACTTGACTTCCTTACTCTCTCATATTATCCCTCTCCCTTCCTTAATGCATTCCTCCTGCATCTCTCCATTATTCCTTCTGATTATGGGTTATGGGAATGATGAATCTGTCTCTGAATTTCTTATGTATGGCATATTGAATGCTCGGAcctcaaatatacaaaatgcacAATGTAAAATGCTTGAACAAGAgaataatttattgatttacagtatttttatataaaggcttcatataaaaatgaaataaaaagactGAAATGCA
>XM_026929529.2
CCCTCCTCAGTGGAGCAGCGCGTGCACGGAGAAGGCGGCTTCATTTGGAGCAGAGATGCGCTCAGCGGTACTGTGTACAGGAGCTCTAGAGGAGTgatatacacacttacactctacAGGAGCTCTACATGAGTGATCTGCACACTCATACTCCATAGGAGGTCTACAGAAGTGAtctgcacactcacactctaCAGGACTTCTACAGGAGTGAGCGCAGAGTGAGTAGGGGAAGAAGTATGGATTAAGGAGGGCCAAGCCCGAAGCGGACCGCACTGCTCCGGAGCTGCGGGAAGGATGCCCGAGCGAGGATGTGCAGCAGCCGGAAGATCGTCTGCAGTCTGCTGGTGCTGTCCGTGCTGCAGGTGGGGCTCGGCGCGGCCAGCATCGCGCTCGGAGCCGTGGCCCTCAGCAGAGCGCGAAACGAGCACAAGACGCAGCAGGGTCATGCGTCCCCGGTGTGGAGCGGGGTGTGTTTCCTTGTCTGTGGGCTCTGTGGGATGCTGTGTGCGAGAAAAAGGACTGGTCTGGTTATGATCCTGTTCTCAGCGTGCTGCATTTGCGGCCTGATCGGAGGAATCCTGAACTTCCAGTTTGTGCGGGCACTGGTGAAGCGTCCTGACGCGGTGCGTTCGCTGCACATGGCCGCCATGTCTCTGGCCTGCCTGGGGATCAGCAGCTGCACCCTGTCCACGTGGCTGACGTGCCGGCTGGCCAGCAACGAGCAGCAGCGCATGTTCCTGGAGCGCGAACACTCGCTGCATCACTCGCACGAGATGGCTGAGAAGGTAGAGGAGGAACGTAGGAGAGGAGAGCACAGTCCGGGTGTTTCACAGTGTCTCAGTgaagtaatggATAACTCCAGCAATGGCATCCCACAAATCACATACAACGGTCGGAGCGCATCACCGTGACAAACTTGGGTCTCACTTTGATGACTTTGCACTCTCGTTAGGAATGATGTTACGGGGCTGATGGCCATCTGTAGGACATTTCCTGCACACAGCAGGCCCTAGGATACTTAATGCtactgtggcaaaaaaaaaaaggggagagaTGATCTCTGTGGATTGAGCACCAATCAGCATTCAGGGACGTGATGCCTCAGGAGTGTTCATTAGTGAGTACAGAGCATTGTATCAGTAAGCACAGAACATGCATGTAAACTTGACTTCCTTACTCTCTCATATTATCCCTCTCCCTTCCTTAATGCATTCCTCCTGCATCTCTCCATTATTCCTTCTGATTATGGGTTATGGGAATGATGAATCTGTCTCTGAATTTCTTATGTATGGCATATTGAATGCTCGGAcctcaaatatacaaaatgcacAATGTAAAATGCTTGAACAAGAgaataatttattgatttacagtatttttatataaaggcttcatataaaaatgaaataaaaagactGAAATGCA

Function

symbol description
tmem196 Predicted to be integral component of membrane.

GO: NA

KEGG:

id description
K22195 TMEM196; transmembrane protein 196

RNA

RNA id representative length rna type GC content exon number start site end site
TU401842 False 929 TUCP 0.47 3 6339507 6343871
XM_026929527.2 False 1422 mRNA 0.52 4 6333989 6343909
XM_026929528.2 False 1371 mRNA 0.51 4 6333989 6343909
XM_026929529.2 True 1428 mRNA 0.52 4 6333989 6343909

Neighbor

gene id symbol gene type direction distance location
sp8a LOC108257401 coding upstream 58977 6272947 ~ 6275012 (+)
cdca7b cdca7l coding upstream 136374 6188169 ~ 6197615 (+)
LOC113536325 NA coding upstream 217282 6112101 ~ 6116707 (+)
LOC113536255 NA coding upstream 224946 6100546 ~ 6109043 (+)
slc39a4 slc39a4 coding upstream 389765 5927706 ~ 5944224 (+)
polr1f twistnb coding downstream 1562 6345471 ~ 6350729 (+)
LOC113536247 ferd3l,LOC102791589 coding downstream 36251 6380160 ~ 6381337 (+)
twist1a twist1,twist1a,LOC108257132,LOC107755947,LOC107709721,LOC107667574 coding downstream 40292 6384201 ~ 6385680 (+)
snx13 snx13 coding downstream 133414 6477323 ~ 6524126 (+)
LOC113536295 ankrd28,LOC108256911,LOC108441435,LOC107745379,LOC107596646 coding downstream 184499 6528408 ~ 6571258 (+)
LOC117595885 NA non-coding upstream 14215 6313485 ~ 6319774 (+)
G339167 NA non-coding upstream 132366 6200493 ~ 6201623 (+)
G339159 LOC108256777 non-coding upstream 158392 6174321 ~ 6175597 (+)
G339126 NA non-coding upstream 205705 6116749 ~ 6128284 (+)
G339055 NA non-coding upstream 345497 5987811 ~ 5988492 (+)
G339275 NA non-coding downstream 130573 6474482 ~ 6526317 (+)
LOC117595843 NA non-coding downstream 149728 6493637 ~ 6494246 (+)
LOC117595844 NA non-coding downstream 150692 6494601 ~ 6497743 (+)
G339279 NA non-coding downstream 182486 6526395 ~ 6527094 (+)
G339290 NA non-coding downstream 234894 6578803 ~ 6645955 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1553603 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1571387 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1581320 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 1665733 4616324 ~ 4668256 (+)
G338163 NA other upstream 1978960 4352522 ~ 4355029 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 260696 6604605 ~ 6616023 (+)
G339324 NA other downstream 367106 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 1896788 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 1939051 8282960 ~ 8285204 (+)
sem1 NA other downstream 2569019 8912928 ~ 8915846 (+)

Expression


Co-expression Network