LOC117595843


Basic Information

Item Value
gene id LOC117595843
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6493637 ~ 6494246 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU401926
cagctgtgtgtgctggtgctgcGGTGACGTCACAGCagagtaacagcacatccctcaGCATCACTGATGGAGCCCTCGCGTCCGGTGTACAGACTGTGTGAGATgaagctgaggaggaggaggagagacaatCCCAAACAGGAGGCTGAATATTTCACATCTGCTGCCAAAGACAAGGAGGGATttgatgtgaaatatataaattcatttatagGACGTGGAGTATTcagttgtgttcattttgataaGGGAGATTTTCTTTTGGAGTACAGAGGACAACTCATAAACAAAGC
>XR_004577045.1
tggtgtggtttgtttatcagctgtgtgtgctggtgctgcGGTGACGTCACAGCagagtaacagcacatccctcaGCATCACTGATGGAGCCCTCGCGTCCGGTGTACAGACTGTGTGAGATgaagctgaggaggaggaggagagacaatCCCAAACAGGAGGCTGAATATTTCACATCTGCTGCCAAAGACAAGGAGGGATttgatgtgaaatatataaattcatttatagGACGTGGAGTATTcagttgtgttcattttgataaGGGAGATTTTCTTTTGGAGTACAGAGGACAACTCATAAACAAAGCTGAATGTGAACG
>XR_004577046.1
CGGTAGGCTCACAGGAAATCGTCCGGTGTACAGACTGTGTGAGATgaagctgaggaggaggaggagagacaatCCCAAACAGGAGGCTGAATATTTCACATCTGCTGCCAAAGACAAGGAGGGATttgatgtgaaatatataaattcatttatagGACGTGGAGTATTcagttgtgttcattttgataaGGGAGATTTTCTTTTGGAGTACAGAGGACAACTCATAAACAAAGCTGAATGTGAACG

Function

GO: NA

KEGG:

id description
ko05224 Breast cancer
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU401926 False 293 lncRNA 0.46 3 6493654 6494234
XR_004577045.1 True 322 lncRNA 0.45 3 6493637 6494246
XR_004577046.1 False 246 lncRNA 0.42 3 6493730 6494246

Neighbor

gene id symbol gene type direction distance location
twist1a twist1,twist1a,LOC108257132,LOC107755947,LOC107709721,LOC107667574 coding upstream 107957 6384201 ~ 6385680 (+)
LOC113536247 ferd3l,LOC102791589 coding upstream 112300 6380160 ~ 6381337 (+)
polr1f twistnb coding upstream 142908 6345471 ~ 6350729 (+)
sp8a LOC108257401 coding upstream 218625 6272947 ~ 6275012 (+)
cdca7b cdca7l coding upstream 296022 6188169 ~ 6197615 (+)
LOC113536295 ankrd28,LOC108256911,LOC108441435,LOC107745379,LOC107596646 coding downstream 34162 6528408 ~ 6571258 (+)
znrf2a znrf2,LOC105939633,LOC106531196 coding downstream 126970 6621216 ~ 6634193 (+)
clptm1l clptm1l,LOC107655116,LOC107694764 coding downstream 158975 6653221 ~ 6662882 (+)
rplp1 rplp1 coding downstream 169847 6664093 ~ 6666353 (+)
LOC113536346 tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211 coding downstream 279073 6773319 ~ 6775535 (+)
LOC117595885 NA non-coding upstream 173863 6313485 ~ 6319774 (+)
G339167 NA non-coding upstream 292014 6200493 ~ 6201623 (+)
G339159 LOC108256777 non-coding upstream 318040 6174321 ~ 6175597 (+)
G339126 NA non-coding upstream 365353 6116749 ~ 6128284 (+)
G339055 NA non-coding upstream 505145 5987811 ~ 5988492 (+)
LOC117595844 NA non-coding downstream 355 6494601 ~ 6497743 (+)
G339279 NA non-coding downstream 32149 6526395 ~ 6527094 (+)
G339290 NA non-coding downstream 84557 6578803 ~ 6645955 (+)
G339300 snrpd1 non-coding downstream 153933 6648179 ~ 6651826 (+)
G339616 NA non-coding downstream 456326 6950572 ~ 6951822 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 149728 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1713251 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1731035 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1740968 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 1825381 4616324 ~ 4668256 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 110359 6604605 ~ 6616023 (+)
G339324 NA other downstream 216769 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 1746451 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 1788714 8282960 ~ 8285204 (+)
sem1 NA other downstream 2418682 8912928 ~ 8915846 (+)

Expression


Co-expression Network