G339290


Basic Information

Item Value
gene id G339290
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6578803 ~ 6645955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU401938
ataatgtattatatatattataatgtattacagtgtatgttaccTGGAGTCGAGCGACGCAGTGGAAAAGTGCTGACGGATTCTGCAGTTGCAGTCTCTCTTTCAATAAATTACTTCCGAAAGCGAAGTACAGGAAATATCCAGCTCTTGACATGTCTGATATTTGATATGGCTAGTGTTCTACAGCAAGAGCTACACATTAATACAGCCAGCACTCCGCTCCGGCAGAGAATAAAGTGCAGCGTGTGATGTGTCTCCTGA

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU401938 True 261 lncRNA 0.41 2 6578803 6645955

Neighbor

gene id symbol gene type direction distance location
LOC113536295 ankrd28,LOC108256911,LOC108441435,LOC107745379,LOC107596646 coding upstream 7545 6528408 ~ 6571258 (+)
snx13 snx13 coding upstream 54677 6477323 ~ 6524126 (+)
twist1a twist1,twist1a,LOC108257132,LOC107755947,LOC107709721,LOC107667574 coding upstream 193123 6384201 ~ 6385680 (+)
LOC113536247 ferd3l,LOC102791589 coding upstream 197466 6380160 ~ 6381337 (+)
polr1f twistnb coding upstream 228074 6345471 ~ 6350729 (+)
clptm1l clptm1l,LOC107655116,LOC107694764 coding downstream 7266 6653221 ~ 6662882 (+)
rplp1 rplp1 coding downstream 18138 6664093 ~ 6666353 (+)
LOC113536346 tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211 coding downstream 127364 6773319 ~ 6775535 (+)
cndp2 cndp2,LOC107748690,LOC107696911,LOC107739559,LOC107688323 coding downstream 349358 6995313 ~ 7008911 (+)
tshz1 tshz1,LOC108257250,LOC108429095,LOC107748691,LOC107592027,LOC107696938,LOC107739558,LOC107688322 coding downstream 590145 7236100 ~ 7278140 (+)
G339279 NA non-coding upstream 51709 6526395 ~ 6527094 (+)
G339275 NA non-coding upstream 52486 6474482 ~ 6526317 (+)
LOC117595844 NA non-coding upstream 81060 6494601 ~ 6497743 (+)
LOC117595843 NA non-coding upstream 84557 6493637 ~ 6494246 (+)
LOC117595885 NA non-coding upstream 259029 6313485 ~ 6319774 (+)
G339300 snrpd1 non-coding downstream 2224 6648179 ~ 6651826 (+)
G339616 NA non-coding downstream 304617 6950572 ~ 6951822 (+)
G339618 LOC108429093 non-coding downstream 307107 6953062 ~ 6959284 (+)
G339659 NA non-coding downstream 586929 7232884 ~ 7233107 (+)
G339661 NA non-coding downstream 601865 7247820 ~ 7250415 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 234894 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1798417 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1816201 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1826134 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 1910547 4616324 ~ 4668256 (+)
G339324 NA other downstream 65060 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 1594742 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 1637005 8282960 ~ 8285204 (+)
sem1 NA other downstream 2266973 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 2473059 9119014 ~ 9134179 (+)

Expression


Co-expression Network