G339324


Basic Information

Item Value
gene id G339324
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6711015 ~ 6717146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU401977
ctgtctctctgctgacCCACCTGCTGGTAGAAGAAATTCAGCGTTGGTTTGTCTTCAGTAAACTGATTCAGGAAGCCCTTTGGCAGGTAGCGGATCCGCAGCTCATACCTGAAAGAGGGACAGTGAGAGGAGGGATGGTGAAAAAGTGCAGCGTGTGTGGGAGTGCTGAGAGGAATTCATGGATCATCAAACTGACAGTAGTGTCTTATATTGTGCAACACAGAAACATTACAaatcaaatgcaaaaaacagagGGAAGAAGGGTCCTTCTTCCACACAGATTCTATTGGAAAGCATCTATATAAAGCATCTCTGGTCATAATGCTGCTACATAAGTCCTTCTCTCGACAACCCTTACAAAGATGAGGTAAGATGAACAGGAGCCTTGCTTGAAAGTACTAAATGCTTGATTTTTCAAGGTTTCAAGAGTGCAATTAACAAACAACTAAAAAGTATGTGAGTACATGAGACAAGAAAGTGGTGGATAGTACTGCCTGGTGTGCTTCTCTccaacatacactcactcaatAACAAAACAGTGGAACATCAGCTGCTTGTGAAAATGGTTAAGGACTTTTCTACTACAGCTGTTAAACTAAATCGTTAATGATGTAGCAGTGGAGCCTCCTGGTTTCTCATGACTCAGATCAGCCCATGACCCCACTCGCTGCCAGAAATAGCAATGTGGAGgagtatataattatattattatataaacctAGGTTGGTGTAGGGAAGTCTCCATCCTGTCCCAAGCTGGGAAGCCTTACTCTAATCTATtacatgtgaaataaataataaatcaaaaaaaaaaaaaattacacacatgaATAAGATGCAAGTTACCCAAAAGTAGCAGAGGCACAAGCATGATTAGAGCGTTCAATGCCAACTGAATCCATGCTGATGCAGTGAATGAAAATTGCTTGCCTTATTCTACATAACCAGTGATTCAGTCATCAGATCATCCATCTCCATATGGTTCATCTCTGCATAAACGGCAATTCATTGTGTGAAAATCCCCCCGTCTAATGTTTCCCTTCACTGCAGAAACCAAGAATAAGAAGTCCTACACCATCCGACATCTGCACAGCATTCCCCAGGCCATAATCCCCTTAAACCAGCACCACATCCCCACTCTCTGATAAGTGGTACATGTGCGCTTTATTGCAATAACAATCTCAGTGTAACTGCACAAAACACTTGCTTGATATTTAGTACCGTACTTTTTATTGCATTATAAGATTGAACCATTTTTTCCAATTATCCACTATGTATATGATATAATAACCACTACATCATTTGCACACTGCACTGTGTACTGcatttttgcacattattgggcttaaagcatattatttataCTGCATTATAATGTTCTATTTAATCTATGTGAACACAAACCAAAAGAAATTCCACTGCTAATAAAAGATTCTGAACCCGACTGTCGGATCCATGATCACTTTCTCGTTCTCATATCACTAGATGTATTCCCATAAAAATCCCTTTGAGGACAGCTAAACAAAATAGTTGTGGGCAGGATTATACTTTACTCCTTAGTTTTAAGTCCGCCCAAACACTAAGATGTTACTGCTGTATTCAGATTACCTCGGAAGCTATCCAGctaaaatgtctgtatgttgctGGATCTATACTAGTATATACTAGCGAATACtagtaaatacagtataacactcatttaaaggtaagaagtgcaaCTTTGTTCTGAATCTGTCCAATGACAACGGAAATCTAATATTGCTAGCTACACCGGCAGCAGCCAGGACAAGAAGTCTGTgtgtgagcaagagagagacttTTGGTGAAGGTTTTCCAGTCATTACACTCCATAAGCGAGGTAATGTACAACAGACAAAAGGAGAAGATCTGGCTTGGCTTACCTAATCTGCGTCAGcaaaagtgaatgtgtgtgcatgcgaaGATGACTCAGTCAGGGTGTGTTTAATGAAAGCTTGTGCATGCAtgggtaaatgtgtgtgtgttctgtctcaTTTCTTTGGCAGTGTAATTCACTAGAACTGATCCCACTTTGGCAGAGAGCTTGGTGATAAGTGCACTCTGGTGCTCCCTCTGCTGCCTCTTGCCAATCCAATGCTCGCTGAGGCTCCACACACCAAACCATTCTCTCAACACCCCCATCACCCCTGTTACTCTGATTAGAACCTTGGTCTTGGCCACGATGAATGCCTCTGGTGCTGCTCATGCAGTGAGAATGTACCACTAGAATGGACAATTATTGCTGTACGTGAGATGAGAAAAAACTGGCTGAAAAACAGGCACTTCACTATTCAGGGTGCCAACACACAATTACAGTCGGACTCTTCATGCTTCTTACTGCACCTTGATTTTTTCCAGTAGGACCACTTGGCACTTTTCCAGTATGAAATCATCAGTTTCATTCATTATGGAAGATCTTCACTACAAAAgggttaatgtaattccatttGGACTGCCAGAACAAATTTCACCATTTGAATATTATGCCCACTTGcttaatattaacatatttaaaagaacattttagtAACCTAAAACAagtgtaaaaatatttccaaagcATTATCACATAGTGTAGAACAAATGCATGTCATTTATGCCACACTTCTACTCACCTGATTTTAAACTGTTCATCATCTTTaactaaatacaaaaaagaaagtatTCACTATTAAAAGTGCTGTTACATGATACTTAACTTACAACAAGCATATTACCCCCCTTTCTGTAGCTAAATCTCAAAGAGTGTTCTGCTTATCAACACAGGATCTATATTACACCCTGGTGAACATATACAGTAAAGTGCCTCGTTGTGTTTGAGAgtcttaaatataaaacaaactaaaaaaaaaactggcttaTCTGTGTGGAAGTGAGTTGCATGTAGTGTGctttcacatggtgaaatatCAGTGACATAAAATATCAAATTCCTGTTTCCACAAAATAtgaagatgcattttttttttacctggatCTTAGGCAGAGCGAGATATTACAATGAAACCTTTACGCAGTGTAAAGTAATGGGCTGGCATACACCTATGTGAAAGATCATgacatttttgcattaatgcagAATCTTTCACAGCAGAATTATGATGCATCTGTGAATAGATTATATTATCCTCCCTATCATTTCTATCGTAACAACTTATACAGGAAATTGTATGGCAGATACTCCACATAATCCAAGcccaataataaacagattaagaaagaaaagttatttaacaaagcaaaaatgtcttctgttagatgtttttttatcgttcatggaaggagtctccagtatcagaaCTTTGTAAAGCTTTTTTCTGCTAtgggaaattcttcaggacagaggacttgtGTGATTTCTCAGCAGCATGATAAACCATCTTATTAACTCtaagagaaagtgaaggaaagaaTGTTAAGGAATGACTATTTGTGGCTggaagtgacaacaggaactaacttgcggttgttccacaatattaaatgtaactataaacggataaaaagtattacatgtctttaattttaaaaatgtaactgttggcaaattgctgtggtataagaaagATAATCTAATGAGCTGCTATGGTAAAGGTTTAATACCACAGTGGGACTGAGGCTGAAACCCGGTAGGACGTAAGGTGATGTAATCATCCCCGGATGCCCACTTAAACTGGggacatcataaaaataaataagtccaTTTTGGAACTATTAGCAGTGCAGCACTTAAGCCTATGGGGGCTGGAATTAGGGAAGTCTAAAGAGGCTCCTCATGTTCCTTTGAGATTAAAGCACATTGTCCTTTGGTAATGACACCATTCCCTAACCCCGAGGTCTCCAAGGTTGCGTGGCACTTTTCCACCCATCCACACAAAGACGAGACAAAGACCCATCAACACCTATGGAAaactgagcagtgtgtgtggctgtgcaGATGTGCTGAGGGGACTTCTCCTGACGTTTCTCCTGCATCTGAATGTAACCACAGTCTGCTGGAGGATGACCTCACCTGGCTGACATGCTCAGACAGCAGTCAGAATTCAACACGTGTTGCCCTGAGGGTTTGTTTTCTCGAACAAGCATTGTGTGTCAGCACAAATTCATCGACAGCGTTTTCATGCTCCGACTCATCCTTTTTATCTCAGAGTACCCCCGGGGCCATGACTGACAAAAACATGTGTttgatttataaaaaaacaaactggaaAGGAGTGATAAATGTGCAGGGAGGAAGCAGAATAATTAATGTTTAGAGTGAATTCAGCAACATTATAGTAGACAGACTTTTATATTTTCGTTTTAACAGAGGTTTCTATTCATCCaagcttttatgtttttaatacaaAGTTCCATTTTGTGGAACTGTGCTGCTGAATCTGGCTGTATCATGATGCATTAACATAACTGTTTTTCAGCATAGAAGTAAAGAATAGAGACCATAAAGGAACAATAACAGGTGGGACACCATACTGCACGTTTACACACTCTGAATCTCAATTAATGTTAACAAACTGATCTATCAGGCAGAATCTAAACCAGAAAATACTTGTCTCTGCAAATCAGTTCATTAAAATATCATGATCAATAGCATCAAATTCTATACTCAAATCCAACAAAACCAAAACGAACACATCTGACACAAAGCATTGCTACGTTGATTGCCGATTCTGTACTGCTACTTCTGGAAACCAGGCTGAAATACATCAGGATTGTTGTTCCAACCTGAACACGCTGTTTGGTGACGTCTTTCTCCAAAATCATACATAGGAAACATGTTAAAGAGAATGGACGGGTATTTGAAGTTAGACATCAATCCcagaaaaataacacaattataGTCATCATAATGAGGAAATAAATGGGAGATTGGAAAAGATGagcaacatttatttaattttctcaggaaaaaaaatcttcctttGTTCCTATTAGATACAGACAGATAAAACAGAAGTAGGGAAATGAAGAAGAACACAATGACATCAGCTTTGAGAGAAAGGCAAAAGATTTCTCATGGCTTAACCAAACCCCTGCTTTGCTCTTATAAATGACATCACTACCCATTTAAAGGTTTCCTTTAATGATATTCTCTGACTCAGTTTGCAGACTGTGTTTGGACTTCCAAAATGGTATCAGTGGCCTTCATGATCACTAGACTGCTCCTCATCTACTTTAACAGcacagtaaatgtgtgtgcctTCACACAAAGCCATTGAAAACAAAGCCAAGTCCTGAGTGGCATGGAAATGAAACAGCTGATGATTAAAAGACCTCCGACTCTCTGAGGTACGGTAAAGCTAACAAAGCGTGTTATAGCTGATTTGAGCTGGCTAGCAGAGCCTGAATAAGTGCAGTTTGGGAAGCAGTAATGGTACATTGTCTGAAGAGGCTTACATAGAGAAGACGATGTACAAAATGCCATCTGTGAGATGGTGCGTGTATGCCATGACCTAATGGCAGACACATTGTCCAGTTGGTCCAGTGACAGTTCAAGTACTGATCACTATTCTGTACACTACAATGGCAATGCTGTTGGCACAGGTGCTGTAAACACAAATCACAGTTATACTCAATGCTCCATTTGTGTGCTCAATATAACAGACCTGCTCACAACAGTACCCCTCAACacttcattttaaaccattaatatATACGAAAATAAAACTACTGCTCAGGGAATGTCTCTATACCCTCATTCAAAacgaacacacacacacacacacacacacttagaagTCAGTTACAACTCTCTGTCTGCCGCAGTGCCACAACTGCCGGCTGAATCACCATGACGACGAGGGAAGACTGCTACTCATCTTCAGGGAGGATGGGATAgatttgtgcacacacacacacacacacacacagattcttttgtttagctttaattaaaagtaaaaataaaaatgcagagaCTATTTTCACCCAGGTAAATGTGACTGACGTCAGCCGTGCCTCTTGGTTGCATACACAAACCAGGAGActagagtgatttttttttttactaaaatgttGTTTTGTGCTGTTGggtatcagaatcagaaaagcGTTCATAAACAGAGCTGTTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU401977 True 6091 TUCP 0.39 3 6711015 6717146

Neighbor

gene id symbol gene type direction distance location
rplp1 rplp1 coding upstream 44662 6664093 ~ 6666353 (+)
clptm1l clptm1l,LOC107655116,LOC107694764 coding upstream 48133 6653221 ~ 6662882 (+)
znrf2a znrf2,LOC105939633,LOC106531196 coding upstream 76822 6621216 ~ 6634193 (+)
LOC113536295 ankrd28,LOC108256911,LOC108441435,LOC107745379,LOC107596646 coding upstream 139757 6528408 ~ 6571258 (+)
snx13 snx13 coding upstream 186889 6477323 ~ 6524126 (+)
LOC113536346 tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211 coding downstream 56173 6773319 ~ 6775535 (+)
cndp2 cndp2,LOC107748690,LOC107696911,LOC107739559,LOC107688323 coding downstream 278167 6995313 ~ 7008911 (+)
tshz1 tshz1,LOC108257250,LOC108429095,LOC107748691,LOC107592027,LOC107696938,LOC107739558,LOC107688322 coding downstream 518954 7236100 ~ 7278140 (+)
galr1a galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058 coding downstream 757561 7474707 ~ 7477662 (+)
sall3b LOC108256805,LOC107090828 coding downstream 805784 7522930 ~ 7531501 (+)
G339300 snrpd1 non-coding upstream 59189 6648179 ~ 6651826 (+)
G339290 NA non-coding upstream 65060 6578803 ~ 6645955 (+)
G339279 NA non-coding upstream 183921 6526395 ~ 6527094 (+)
G339275 NA non-coding upstream 184698 6474482 ~ 6526317 (+)
LOC117595844 NA non-coding upstream 213272 6494601 ~ 6497743 (+)
G339616 NA non-coding downstream 233426 6950572 ~ 6951822 (+)
G339618 LOC108429093 non-coding downstream 235916 6953062 ~ 6959284 (+)
G339659 NA non-coding downstream 515738 7232884 ~ 7233107 (+)
G339661 NA non-coding downstream 530674 7247820 ~ 7250415 (+)
G339700 NA non-coding downstream 677928 7395074 ~ 7399070 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 94992 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 367106 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1930629 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1948413 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1958346 4698257 ~ 4752669 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 1523551 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 1565814 8282960 ~ 8285204 (+)
sem1 NA other downstream 2195782 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 2401868 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 2507458 9224604 ~ 9229638 (+)

Expression


Co-expression Network