G339616


Basic Information

Item Value
gene id G339616
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6950572 ~ 6951822 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU402314
CTGCAGGGAGGTTCTGTGTTCTTTGGCTTCCTCTGAACAGGTGGATGGAGGTGTGACCTATTGTGCTCAGAGAGTAGGTCTCTGGCAAACCTTCTGCTTCCTCCTCCTCGCTTATAAGATCCTGCCTCTTCCCTGAGCACAGCTTCCCTGTGTAGTTCCTCTATGTTTGCAGAGGGCCATGACATAGGAGAAGAGGCGGGTAAGCAGATTGACTGGGGAGGGAGTCTCAGACTTGCAGCTCATGTCCCTGATGAGGATAGCACGACCAAACTTCCATTCAGTGTCTGACTGATCCTGGATGCGCTGGTATGTGTTGCTCATCATGGCAATGAGCAGGTTGAGCAGCACGATCACTGTCACCACCAGATAGATTCCAAAGACTAGGAGAATCAAGCCATTTATCACATCAGGAGAGTGCtctgaacatttaattttgctcatttcttCCAGCTCAGTTAAGCCAAAGAGAGCAAAAAACAGCAAACCAGGGATCTTTGAGATCATCTCTGAGTTCGTCTTTGGatcactgacatttttattgctgCTGTTCACTGAATAATTGCTCTGAGGTCCAGTTAGAGGATGGCAGACAGCAGTAAGGCTCAGACAGAAAGCTGTGtgaaaaagcagcaggatgGTGGCAAAGCGGCACAGGTCCTTCATCAGTTTTGTGATAATGATGGCCCATGGCCCAAACAGGTGGTGGAACATTAGGAACTCCAAGAACTGAATAAAACCCAGTGTCATTGCAACCGCCAATAGAAAGTTGCGGGCAAACAGGCAGCGTGAGATAGCTTCATGCGACGACTGGAGGACAACAGCCAACAGGTGGCAGAAGACAGCGAGTGCAGAGAAGACCAAGAGGAGGACCCTGATCCAGGCCAAACCTGCACGCTCAGCTGTTCGGCTGAGCTCAGATACCAGCATACCACACAACCAGGTCAGCAAAAGCCACTCACACCATCCTGGAATTAGCCGACACTCAGAGGGTGGACTCATAGGTGGGTAGACAATGGTGAGGATGAAGAGGGCCAGGAGAAAGACGTGGGACACCAGATGACTCATCAACTTCATAATAGGAATGGCGTTGAATCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU402314 True 1096 lncRNA 0.50 2 6950572 6951822

Neighbor

gene id symbol gene type direction distance location
LOC113536346 tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211 coding upstream 175037 6773319 ~ 6775535 (+)
rplp1 rplp1 coding upstream 284219 6664093 ~ 6666353 (+)
clptm1l clptm1l,LOC107655116,LOC107694764 coding upstream 287690 6653221 ~ 6662882 (+)
znrf2a znrf2,LOC105939633,LOC106531196 coding upstream 316379 6621216 ~ 6634193 (+)
LOC113536295 ankrd28,LOC108256911,LOC108441435,LOC107745379,LOC107596646 coding upstream 379314 6528408 ~ 6571258 (+)
cndp2 cndp2,LOC107748690,LOC107696911,LOC107739559,LOC107688323 coding downstream 43491 6995313 ~ 7008911 (+)
tshz1 tshz1,LOC108257250,LOC108429095,LOC107748691,LOC107592027,LOC107696938,LOC107739558,LOC107688322 coding downstream 284278 7236100 ~ 7278140 (+)
galr1a galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058 coding downstream 522885 7474707 ~ 7477662 (+)
sall3b LOC108256805,LOC107090828 coding downstream 571108 7522930 ~ 7531501 (+)
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding downstream 582218 7534040 ~ 7580421 (+)
G339300 snrpd1 non-coding upstream 298746 6648179 ~ 6651826 (+)
G339290 NA non-coding upstream 304617 6578803 ~ 6645955 (+)
G339279 NA non-coding upstream 423478 6526395 ~ 6527094 (+)
G339275 NA non-coding upstream 424255 6474482 ~ 6526317 (+)
G339618 LOC108429093 non-coding downstream 1240 6953062 ~ 6959284 (+)
G339659 NA non-coding downstream 281062 7232884 ~ 7233107 (+)
G339661 NA non-coding downstream 295998 7247820 ~ 7250415 (+)
G339700 NA non-coding downstream 443252 7395074 ~ 7399070 (+)
G339721 NA non-coding downstream 497928 7449750 ~ 7467646 (+)
G339324 NA other upstream 233426 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 334549 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 606663 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 2170186 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 2187970 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 1288875 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 1331138 8282960 ~ 8285204 (+)
sem1 NA other downstream 1961106 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 2167192 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 2272782 9224604 ~ 9229638 (+)

Expression


Co-expression Network