G339659


Basic Information

Item Value
gene id G339659
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 7232884 ~ 7233107 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU402366
gtgtgtgttttcagtcagGGTTACGTGTGCGTAAAAGCGAGATTGGTCCTGTGGTTTACCTGAGCAGTGTGcgcttatctctctctctatctctctatctctctctctctctctctcacacacacacacacacacacccccaactCTGACCATCTTTACTGATTCGAGAGAGATAAAGTGAGACTTTAAAGTCACatcatttctgttgtttttgcacAAAAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU402366 True 224 lncRNA 0.44 1 7232884 7233107

Neighbor

gene id symbol gene type direction distance location
cndp2 cndp2,LOC107748690,LOC107696911,LOC107739559,LOC107688323 coding upstream 223973 6995313 ~ 7008911 (+)
LOC113536346 tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211 coding upstream 457349 6773319 ~ 6775535 (+)
rplp1 rplp1 coding upstream 566531 6664093 ~ 6666353 (+)
clptm1l clptm1l,LOC107655116,LOC107694764 coding upstream 570002 6653221 ~ 6662882 (+)
znrf2a znrf2,LOC105939633,LOC106531196 coding upstream 598691 6621216 ~ 6634193 (+)
tshz1 tshz1,LOC108257250,LOC108429095,LOC107748691,LOC107592027,LOC107696938,LOC107739558,LOC107688322 coding downstream 2993 7236100 ~ 7278140 (+)
galr1a galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058 coding downstream 241600 7474707 ~ 7477662 (+)
sall3b LOC108256805,LOC107090828 coding downstream 289823 7522930 ~ 7531501 (+)
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding downstream 300933 7534040 ~ 7580421 (+)
nfatc1 nfatc1,LOC107739553,LOC107656600,LOC107563708 coding downstream 359519 7592626 ~ 7636971 (+)
G339618 LOC108429093 non-coding upstream 273600 6953062 ~ 6959284 (+)
G339616 NA non-coding upstream 281062 6950572 ~ 6951822 (+)
G339300 snrpd1 non-coding upstream 581058 6648179 ~ 6651826 (+)
G339290 NA non-coding upstream 586929 6578803 ~ 6645955 (+)
G339279 NA non-coding upstream 705790 6526395 ~ 6527094 (+)
G339661 NA non-coding downstream 14713 7247820 ~ 7250415 (+)
G339700 NA non-coding downstream 161967 7395074 ~ 7399070 (+)
G339721 NA non-coding downstream 216643 7449750 ~ 7467646 (+)
G339804 LOC108256927,LOC108262328,LOC108441690 non-coding downstream 439873 7672980 ~ 7674655 (+)
LOC113535942 NA non-coding downstream 531646 7764753 ~ 7772456 (+)
G339324 NA other upstream 515738 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 616861 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 888975 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 2452498 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 2470282 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 1007590 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 1049853 8282960 ~ 8285204 (+)
sem1 NA other downstream 1679821 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 1885907 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 1991497 9224604 ~ 9229638 (+)

Expression


Co-expression Network