G339804 (LOC108256927,LOC108262328,LOC108441690)


Basic Information

Item Value
gene id G339804
gene name LOC108256927,LOC108262328,LOC108441690
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 7672980 ~ 7674655 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU402542
CGGGTCAGAGAGAATCTGGTTCatttctttatcaaaatatccTCTGGTAAGCCACCTCCACAGGCACACGGTGGCTGTACACTGGATCAATGATGCCTCCAGTAGCAATCTGTGCTTCCAAAAGACGAATGCCATGATCTTTGACAATGAGGTCTTTCTTCAAGGCCTGGAACAATGAAATGGTGTTTCCTGTGTGAGGGTCGGTGTAGCCAGTGACTGCCTTCTCTGCAGAAAGCAGCTTGTTTTTCCATTCAGTCCCCACGACTCCCTGAGACACTGCCTCCTCCACCGAGAGTTTTTTGTTATTCAGTGGATCAACCATGAAGCCAGTAGCAGCTTGAGCCTCCAGTAATACCAATGAGGTTCCAGGTGTTAGAAGTCCTTTGGATTTGGCTTCATAGATGCTCATGGTCTGTTTGGTGGACTGCACAAACACTCCTGCAATACAGTCGGTTCCCTGCAGGTACTTGCGTACTGAGTCCATATTGCTCACTTGATCTACTGTGACCTTTCCAAGGCTAAGGTCTTCAAAAAGTTTCTGATCAATGATTTTAGATTCTAGCAAGTTCTGCGCTGTTACTTGCTTTTTGATGCCTCGAAAAGTAGTCATAGCTCCTTCTGTTTGGCCTTTTTGCTGAAGTGACATTTTCAAGATCTTTTGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU402542 True 665 lncRNA 0.45 2 7672980 7674655

Neighbor

gene id symbol gene type direction distance location
fbxl6 fbxl6 coding upstream 8675 7655705 ~ 7664305 (+)
nfatc1 nfatc1,LOC107739553,LOC107656600,LOC107563708 coding upstream 36009 7592626 ~ 7636971 (+)
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding upstream 92559 7534040 ~ 7580421 (+)
sall3b LOC108256805,LOC107090828 coding upstream 141479 7522930 ~ 7531501 (+)
galr1a galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058 coding upstream 195318 7474707 ~ 7477662 (+)
trhrb LOC108256856,LOC108441692 coding downstream 196222 7870877 ~ 7877775 (+)
pkhd1l1.1 pkhd1l1 coding downstream 246777 7921432 ~ 7971682 (+)
gdf6b gdf6 coding downstream 298901 7973556 ~ 7976616 (+)
LOC113536206 LOC108256941,LOC108410903,LOC107717718 coding downstream 346146 8020801 ~ 8028040 (+)
LOC113535936 LOC108270576,LOC108256939,LOC108270587 coding downstream 368957 8043612 ~ 8047251 (+)
G339721 NA non-coding upstream 205334 7449750 ~ 7467646 (+)
G339700 NA non-coding upstream 273910 7395074 ~ 7399070 (+)
G339661 NA non-coding upstream 422565 7247820 ~ 7250415 (+)
G339659 NA non-coding upstream 439873 7232884 ~ 7233107 (+)
G339618 LOC108429093 non-coding upstream 713696 6953062 ~ 6959284 (+)
LOC113535942 NA non-coding downstream 90098 7764753 ~ 7772456 (+)
G339830 NA non-coding downstream 138977 7813632 ~ 7813864 (+)
G339965 NA non-coding downstream 214049 7888704 ~ 7889014 (+)
G340047 NA non-coding downstream 323428 7998083 ~ 7998288 (+)
G340056 rpl30,LOC107710097,LOC107556383 non-coding downstream 422514 8097169 ~ 8100677 (+)
G339324 NA other upstream 955834 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 1056957 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1329071 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 2892594 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 2910378 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 566042 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 608305 8282960 ~ 8285204 (+)
sem1 NA other downstream 1238273 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 1444359 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 1549949 9224604 ~ 9229638 (+)

Expression


Co-expression Network