G340146


Basic Information

Item Value
gene id G340146
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8233867 ~ 8237952 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU403010
tgtattatatacacattgggttttagccacatatttacatgaattaatttagtaGAGAACTTCAAGCATTtaagtaattctaataattcTTTGGTGTAAAAATCACACTCCGTTTTTTCATGATTACTGAACCTCTGAATCACTTTTTTCAGAGCCCATGCAGAGAGTGGTGTTACACAACACGTAGCACTGCACAAGCAACGAAAGGGTGAcgttaatatttttgtaatagaGCAGGATTTTAATTGAAGCCTTTAATTGAAGTCAGGAAAATAAGCATTTTGACATCATAGTTGTGCTAAGAGGGGTcatgaaatgtggaaatgatGGCCCAAATTTGTGAACacaatgtgtgtgaaaatgccacTGAACCAGCAGGAAATACAGATGGATTAAAAAGAGAGTGCAACAAATGAAGTCCATTTGTGGTCGACTATAAAAAAGTGaatgatgtgttttttgtgct

Function

GO:

id name namespace
GO:0048646 anatomical structure formation involved in morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU403010 True 466 lncRNA 0.35 2 8233867 8237952

Neighbor

gene id symbol gene type direction distance location
hpca hpca,LOC108425130,LOC107556378,LOC107702105,LOC105005722 coding upstream 33073 8168217 ~ 8200794 (+)
nt5c1aa 5nt1a,LOC108425118,LOC107653825,LOC107710055,LOC107702103,LOC107724290 coding upstream 97049 8122029 ~ 8136818 (+)
si:dkey-284p5.3 NA coding upstream 127899 8101846 ~ 8105968 (+)
laptm4b laptm4b,LOC103028646,LOC107724295,LOC107702097,LOC107565197 coding upstream 139204 8082902 ~ 8094663 (+)
mtdha mtdh coding upstream 153014 8070868 ~ 8080853 (+)
zbtb8b zbtb8b coding downstream 63238 8301190 ~ 8308111 (+)
fuca1.2 fuca1 coding downstream 72168 8310120 ~ 8318177 (+)
gmpr gmpr,LOC108257268,LOC108425204,LOC103024228,LOC107584250,LOC107696222,LOC107702110 coding downstream 80608 8318560 ~ 8329262 (+)
pag1 pag1 coding downstream 261844 8499796 ~ 8546369 (+)
znf704 znf704,LOC107584255 coding downstream 313105 8551057 ~ 8611452 (+)
G340056 rpl30,LOC107710097,LOC107556383 non-coding upstream 133190 8097169 ~ 8100677 (+)
G340047 NA non-coding upstream 235579 7998083 ~ 7998288 (+)
G339965 NA non-coding upstream 344853 7888704 ~ 7889014 (+)
G339830 NA non-coding upstream 420003 7813632 ~ 7813864 (+)
LOC113535942 NA non-coding upstream 461411 7764753 ~ 7772456 (+)
G340197 NA non-coding downstream 161266 8399218 ~ 8411358 (+)
G340248 LOC108256763,LOC108425228,LOC103022454,LOC106515840,LOC107724303,LOC107087831,LOC107584252 non-coding downstream 251727 8489679 ~ 8491914 (+)
G340257 NA non-coding downstream 375534 8613486 ~ 8617041 (+)
G340297 NA non-coding downstream 430627 8668579 ~ 8668782 (+)
G340336 LOC108256786 non-coding downstream 606322 8844274 ~ 8845684 (+)
G339324 NA other upstream 1516721 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 1617844 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1889958 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 3453481 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 3471265 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2745 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 45008 8282960 ~ 8285204 (+)
sem1 NA other downstream 674976 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 881062 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 986652 9224604 ~ 9229638 (+)

Expression


Co-expression Network