LOC113536074 (LOC108257189,LOC108257413)


Basic Information

Item Value
gene id LOC113536074
gene name LOC108257189,LOC108257413
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8240697 ~ 8271499 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU403071
GGGCCTGCCTGTGTCTGCCAAGCTACTACTTTGGCAACTTTGGTCGTGGGAGAACAAGAGGCTGTGGTCTCTTTGGTTGAAATTATCCTCTCTGTAGGATCAAAAGCCCAGAGAGTGGAGCTggaccaaacaccaacatttggTTCTGGAGTGATACGTTGGTCTATAAAAATTAAGGAACTGTTAATTATAACATAAGTAGAAGCCATACCAGACTTTGTCCTGCTGGTTTCTTACTGTTGTTTGGAACATTCAATCTTggctaataaaaacatttcacagcACATTATTATACCCATAAATTGCTGAGTGCTGATTTGTAATTGTCATTTTATGTACTGTaattgtgattgtgattgtgatgTACATCACAACTGTACATGTAATTgtgatttttggtttgtttgtttgtttcagaaaGATAATACCTGATGTGTAAGATGAGAGAAattaaaacaaagagaaaataaaaactgtgtATGGAATAAGTGCACTGACTGTGCACCGTATAACAGTGTAACCTGCTAGGATCAAATAAAGGCTGTTGAATCTAATGCCATTCTGCATTTAGTGAGGAACATCTTTTCAGCTGAATATAAATCTGTTACATTCAATCTGATCACTATTAAAATGATGATTATCTGTAATGCTTAACAgtgaacacaaaaataaatcttttaaagTTCATGTGTTG
>XM_026929788.2
CCATCCTACCTGTGGCTTATTATATATAAAGCAGATACAGTGAATGTATTTGCAAGAAGGATGAGAATATACTTGTTGATTGTGCTGGGGTCTGTTTTCCCAGATTCCTTCAGTAAAGGCCAAGAGCTGAAGGTGGATGTGGACTTCCGTGGAGATGATGTTCTGCAGATTTACTCCCCAGATGCCCATCACTGTCAGCTCGCCTGCACACAGCACCATTCCTGTTTATTCTTCACATTTATCCGAGCTGATTGGAGCAAAGACAACAGGAAATTCTACTGCTACCTGAAGCACACAGCCACCGGATTCCCGTCTCAGGTTGCAGACCTGAAGGGTGTGACCTCAGGCTTCAAACTCAAGCATCAGGACTACAAAACACATGCCTGTCTGTCATCTACATATCAAGATGTAGATTTCACAGGATCAGACTATCTCCAGCTGACCTTAAATACTTCTGATGACTGCCAGAAGCAATGCACCCGTGATCCAGACTgcaaatttttttcattcacaacaGAGACCTTCCCAGATGCAGAAACAAGGAAAAAATGCTTTCTAAAATTCGGCTGGAACGTTCCAATACCATCAGTCCTCATAAAAACACCTGGTCTTGTGTCAGGTTTTTCAGATTCATTGTATAATTCTAAAGAAGAATGTAAGGAGGAGATCTTTgccaacacacactacagaggaAATGACTTTGAGAATGTTCCTGCTGCctcacctcaacactgtcaGTTCCTGTGTAGCAGACATCCCCACTGCACCCATTTCACATACACAACTTCAAAATATTCTACTGAGCCCGACATCAATATGCATTGCTTCCTGAAGCATACGCAGAATATAAACCAGCTCGTGTCAGTTACAGAAGAAGAACTTTTTTCTGGATTTCCAACACGAAATTGCAAGCCCTCaaatgTTTGGGCAACAACACGCTATGAAGGCCTCGACTTCTTGGGCCATGATTACCGTGATTTTAAAACGGACACATCTGAGATCTGTCGAGAAATGTGCACAAAAGACCCAGATTGCCAATTTTACACTTATGTCCTACCATCTTACCATGATGAGGGCATCAGGAAAAAATGCTTTCTAAAATTCCGCTGGACTGTTCCAATACCATCAGTCCTCAAAAAAACACCTGGTCTTGTGTCAGGTTTTTCAGCTTCATTGCAAAAGACTAATGGATTTAAAGAAAAATGTAAGGAGGAGATCTTTGCCAACATACACTACAGAGGAAATGACTTTGAGAATGTTCCTGCTGCCTCACCTGAACACTGTCAGTTCCTGTGTAGCACACATCCCCACTGCACCCATTTCACATACACAACTTTCAGTTATTCCAGTGATCCGAAcATCAATATGCATTGCTTCCTGAAGCATACGCAGAATGTAAACCAGCTCGTGCCATTTACAGAAGGAGAACTTTTTTCTGGATTTCCAACACGAAATTGCAAGCCCTCAAATGTTTGGGCAACAACACGCTATGAAGGCCTTCATTTCTTGGGCCATGATTACCGTGATTTTAAAACGGACACATCTGAGATTTGTCAAGAAATGTGTACAAAAGATCCAGATTGCCATTTTTACACTTATGCCCTACCAACTTACCATGATGAGAGTATCagGAAAAGATGCTTTCTAAAATTCCGCTGGAACGTTCCAATACCATCAGTCCTCAAAAAAACATCTGGTCTTGTGTCAGGTTTTTCAGATTCATTGTATAAGACTAAAGAAGAATGTAAGGAGGAGATCTTTGCCAACATACACTACAGAGGAAATGACTTTGAGAATGTTCCTGCTGCctcacctcaacactgtcaGTTCCTGTGTAGCAGACATCCCCACTGCACCCATTTCACATACACAACTTCAAAATATTCTACTAAGCCTGAGATCAATATGCATTGCTTCCTGAAGCATACGCAGAATATAAATCAGCTCGTGTCAGTTACAGAAGAAGAACTTTTTTCTGGATTTCCAACACGAAATTGCAAGCCCTCaaatgTTTGGGCAACAACACGCTATGAAGGCCTCCACTTCTTGGGCTATGATTACCGTGATTTTAAAACGGACACATCTGAGATCTGTCGAGAAATGTGCACAAAAGACCCAGATTGCCAATTTTACAGTTATGTCCTACCCTCTTACCGTGATGAGGGCATCAGGAAAAAATGCTTTCTAAAATTCCGCTGGACTGTTCCAATACCATCAGTCCTCAAAAAAACACCTGGTCTTGTGTCAGGTTTTCCAGATTCATTGCAAAAGACTAATGGATTTAAAGAAAAATGTAAGGAGGAGATCTTTGCCAACATACACTACAGAGGAAATGACTTTGAGAATGTTCCTGCTGCCTCACCTGAACACTGTCAGTTCCTGTGTAGCAGACATCCCCACTGCACCCATTTCACATACACAACTTCAAAATATTCTACTAAGCCTGAcATCAATATGCATTGCTTCCTGAAGCATACACAGAATGTAAACCAGCTCGTGCCAGTTACAGAAGAAGAACTTTTTTCTGGATTTCCAACACGAAATTGCAAGCCCTCaaatgTTTGGGCAACAACACGCTATGAAGGCCTCGACTTCTTGGGCTATGATTACCGTGATTTTAAAACGGACACATCTGAGATTTGTCGAGAAATGTGTACAAAAGATCCAGATTGCCAATTTTACACTTATGCCCTACCAACTTACCATGATGAGAGTAACagGAAAAGATGCTTTCTAAAATTCCGCTGGAACGTTCCAATACCATCAGTCCTCATAAAAACACCTGGTCTTGTGTCAGGTTTTCCAGATTCATTGTATAAGACTAAAGAAGAAGAATGTAAGGAGGAGATCTTTGCCAACACGCACTACCGTGGAAATGACTTTGAGAATGTTCCTGCTGCctcacctcaacactgtcaGTTCCTGTGTAGCAGACATCCCCACTGCACCCATTTCACATACACAACTTTCAGTTATTCCAGTGATCCGAAGATCAATATGCATTGCTTCCTGAAGTATACTCAAGACGTAAGCCAGCTAGTGCCAGCTAGAGAAGAAGAACTTTTTTCTGGATTTCCAACACGACATTGCAAGCCCTCAAATGTTTGGGCAACAACACCCTACCAGGGCCTCCACTTCTTGGGCTATGATTACCGTGATTTTAAAACGGACACGTCTGAGATCTGCAAAGAAATGTGCACAAAAGACCCAGATTGCCATTTTTACACTTATGTCCTACCAACTTACCATGATGAGAGTATCagACATGGATGTTACTTGAAGCAAGTCATGACTCTACCCAGACCTGAAAAGGTGGTGTACAGGCTTGGATCAAAAGCCCAGAGAGTGGAGCTggaccaaacaccaacatttggTTCTGGAGTGATACattttggggTCTTCAAGTCTCCAGATCTACAAGCAGACCCACGTTCCATGCACTCTAACTATTTGGACGAACCGTGGCTCATTATGTGTAAAGCAGATGCAGTGAATGTATTTCAAGAGAAGATGAGAGTGTATTTGTTGATTGTGCTGGTGTCTGTTTTCCCAGGTTCTTTCAGTAAAGGCCAAGAGCTGAAGGTGGATGTGGACTTCCGTGGAGATGATGTTCTGCAGATTTACTCCCCAGACACCCAGCACTGTCAGCTCGCCTGCACACAGCACCATTCCTGTTTATTCTTCACATTTATCCGAGCTGATTGGAGCAAAGACAACAGGAAATTCTACTGCTACCTGAAGCACACAGCCTCCGGACTTCCATCTCAGGTTCTGGACTTGAAGGGTGTGACCTCAGGCTTCTCGCTCAGCTCAGAGTATAAAAAAGATGCCTGTCTGCCATCTATATATCAGGATGTAGATTTCACAGGATCAGACTATCTCCAGTTGACCTTAAATACTTCTGATGACTGCCAGAAGCAATGCACCAGTGATCCAGACTGCAagtttttttcattcacaacaGAGACCTTTCCAGATGCAAAGACAAGGAAACAATGCTTTTTAAAGTACAGTTGGACTGTTCCAATACCACCAGAAATCCATCACACACCTGGTTTTACAACAGGCTTTTCAGATTCATTGTATGCTAAGGCTGAGGGAACTGAAAAAGAATGTAATGAGGAGTTCCTTGCCAACACAGACTACCTGGGAAATGACTTTGAGGACATCCGTGCTGcttcacctcaacactgtcatTTTCTGTGTAGCATGCATCCCCGCTGCACCCATTTTTCATATACAACTTCAAAACATACTACAAGTAATACCTGGTACAATATGCGTTGCTACCTGAAGTATAAGCAAGATGTAACCCAGCTGGTGCCTGCTAGAGTACAAGATATTTATTCTGGATTTCCAGCACGAAACTGCAAGCTGTCAAATGTTTGGGCAACAACACGCTATGAAAGTTTTGACTTCTTTGGCTATGATAACCGTTATGTTCTAACGAACACATCAGAAACCTGTAGAGAAATGTGCACAGCAGACCCATACTGCCAATTTTACACTTATGTCCTATCATCTTTCCATGATAAGAGCATCagGCATAGATGCTACATGAAGCAGGTCATGATTTTGCCCAGTCCTAAAAAGGTGGTGTATATGCGTGGTGTGGTATCTGGCTTCTCTCTGAGGAACTGTATTACTGGTGAAGATGAATCTACTGCCCACCTTGgAACTGCAGACTGTGGAAAGTCTGGTGATGTGAAGTCTAGGATTTTTGGAGGTTCTGATGCCTCAACAGGTGACTGGCCCTGGCAGGTTAGCCtgcaaaggggaaaaaaacacatctgtgGTGGTTCCATCATTGCCAATAGATGGATTCTGACTGCAGCACACTGTCTATCTCAgCCATACACACAGTTTTCTGTTCGGGCTGGACTAACTAAGCTATCAGAAGGTGGTACAGAGTATGGTCTGGAAAACTTCATTATACATCCTAACTACAATAAAAACAGTGCACAAAATGATGTTGCCCTGATAAAAATCAAgaaaccaatcacattcaataATATTGTAGGGCCAGTCTGTCTGATGAAAGCAGGAAAGGAAGCCACATTTCttggaaaaaaatgcacagtgaCTGGATGGGGAAGGCTTAATTCAGACTCATACCCAGATATACTGCAGAAAGCCCAGGTTCCTCTCATGAGTCCAGAGGTGTGCGCAAAAATGCTGTCCGAAGATGTGACGCCTTATAAAGTTTTTCCCTCTAATTTGTGTGCAGGGTATCCTGAGGGTGTCATAGACACCTGTGAAGGGGATTCTGGAGGTCCACTGGTGTGTGAAGATGAGAACACCTGGTATCTAACAGGAATAACCAGCTGGGGAGTGAGCTGTGCAAGGCCAAACAAACCTGGAGTGTACACCCGTGTTTCCTACTATATACCCTGGATTAGGAATGTGATAGCAAATGCTTAGGCACTGGGAAGCTCATATAACTGGAAGGTCCTAAACAATTGGAAAATATGGTCCCTTGATGAAGAGGCAGGTCATCCATCTTCACCACGGAACAACAGACTGCTGTCTGGCAAATAGATGCATCATTACATTTCTAGCCTGACCTTCATCAGAATAAAAATCTGACATGGACACCTTTGA

Function

GO: NA

KEGG:

id description
K01324 KLKB1; plasma kallikrein

RNA

RNA id representative length rna type GC content exon number start site end site
TU403071 False 694 lncRNA 0.36 2 8257791 8258704
XM_026929788.2 True 5601 mRNA 0.43 42 8240697 8271499

Neighbor

gene id symbol gene type direction distance location
zgc:91944 zgc:91944,LOC108257190,LOC108425172,LOC103026000,LOC107710043,LOC107724285,LOC107702106 coding upstream 4961 8222160 ~ 8235736 (+)
hpca hpca,LOC108425130,LOC107556378,LOC107702105,LOC105005722 coding upstream 39903 8168217 ~ 8200794 (+)
nt5c1aa 5nt1a,LOC108425118,LOC107653825,LOC107710055,LOC107702103,LOC107724290 coding upstream 103879 8122029 ~ 8136818 (+)
si:dkey-284p5.3 NA coding upstream 134729 8101846 ~ 8105968 (+)
laptm4b laptm4b,LOC103028646,LOC107724295,LOC107702097,LOC107565197 coding upstream 146034 8082902 ~ 8094663 (+)
zbtb8b zbtb8b coding downstream 29691 8301190 ~ 8308111 (+)
fuca1.2 fuca1 coding downstream 38621 8310120 ~ 8318177 (+)
gmpr gmpr,LOC108257268,LOC108425204,LOC103024228,LOC107584250,LOC107696222,LOC107702110 coding downstream 47061 8318560 ~ 8329262 (+)
pag1 pag1 coding downstream 228297 8499796 ~ 8546369 (+)
znf704 znf704,LOC107584255 coding downstream 279558 8551057 ~ 8611452 (+)
G340146 NA non-coding upstream 2745 8233867 ~ 8237952 (+)
G340056 rpl30,LOC107710097,LOC107556383 non-coding upstream 140020 8097169 ~ 8100677 (+)
G340047 NA non-coding upstream 242409 7998083 ~ 7998288 (+)
G339965 NA non-coding upstream 351683 7888704 ~ 7889014 (+)
G339830 NA non-coding upstream 426833 7813632 ~ 7813864 (+)
G340197 NA non-coding downstream 127719 8399218 ~ 8411358 (+)
G340248 LOC108256763,LOC108425228,LOC103022454,LOC106515840,LOC107724303,LOC107087831,LOC107584252 non-coding downstream 218180 8489679 ~ 8491914 (+)
G340257 NA non-coding downstream 341987 8613486 ~ 8617041 (+)
G340297 NA non-coding downstream 397080 8668579 ~ 8668782 (+)
G340336 LOC108256786 non-coding downstream 572775 8844274 ~ 8845684 (+)
G339324 NA other upstream 1523551 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 1624674 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1896788 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 3460311 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 3478095 4757814 ~ 4762602 (+)
G340208 LOC108256789 other downstream 11461 8282960 ~ 8285204 (+)
sem1 NA other downstream 641429 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 847515 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 953105 9224604 ~ 9229638 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 1922248 10193747 ~ 10197002 (+)

Expression


Co-expression Network