G340208 (LOC108256789)


Basic Information

Item Value
gene id G340208
gene name LOC108256789
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8282960 ~ 8285204 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU403100
CTGAGTAAAGATATTTAAATGACTGAGGAAACAAATAAGCAAACGAACAGAGAAATACATCAGTAGAGATGATGggatttgtgtttatattgttttgtgtttatattgagaaaagcacattttttcACCAGTCCCTTCTCACCAGTCATCCAGAAATCCAGAATATGATACTAAATAATGGAGTTAAAACTTgtcttttcatttaaataataactataattgCTTTTTAATGTGGCTGTATCACTATTTGCATTGTTCGATTGCTACTATTTGGGTTCTCTAATTTTTAGGTAACAACACAGGGAGTGTTAAGAGGATACATTCTTAACATTTTGTAATGGCTATAACCAAAATGGATATTACTCGTGATATCATAGCTCTCTTGTCCTAACAAGGTATGAGTTGCATATTTGTGAAAAGTCCACTAAATTAGATGAATCAGAAGGCCCCGATCTCTGTTCCCCAAGTGTGCGCTGACTTGCTGACCCTGATCAGTGGGGCTGGAGACCTCAGAGCAACGAAGGGTCTGAAGGAAACCTGATGATGACCAGCTGATGAAGAGGAGGcggaagatgaagaggaattagaggaaggagaggaggagttATGAGAACGGGGTGGGACAGAATGCAGAGGTGAGGGAACAGTTGACCTATCTGGGGAAGGCTGTGCCAGTCTATGAgggtgtgatgaaacagaggACATCCTATGCACTGGAGATAATGCAGGGCTCAGTAGCGCCCCCTGGTTTCCCAGCGGTGCTACACACAGGGTTGGCGAGGGGTACGCCAGGAGAGTCGCAGCAGCATGAGGGGCCATGTCTCGGCGGTTGGTAGGAGGAAAGGGGGAAGAGGAGGCTGGGCTAGAGGAGGCACTGAGATGAGGGAAGGAGCCCCAAGGCCAAGGAGGAAAGGCCAGGGTGGCTGGGCTCTGATGCAGAGGGTCAAGCTCACTGGCACATTGACTCAGGTGGGACACCAAGCGGGCACCAATAGGATCTGGAGAATCTGCACCCTCCAGAGAGCTGAGGTACCTCACCACCTCGCCAACACACTCACGAAATCCCAACGTTCTGTAGTCTACTGCCAGTGCACGAGCATCAAAATAACCTTCAAGctgctgctcatgctgcatcacagcgcagtgtaacacactcagatgaAAGagctaccctcttccacatacaaaTAGATGAGATGCTGTGTCAccatgattgacaggggagagagagtatgctgCCCcacccacccagacagcacagccagttttgctccttTGGCTCCCGGCCACAGACGGTTGTGGCACCACTGGGATTCAAACCTGCGATTTCCTAACAATAGGgtgaatgtttttctgttgtggCACTCAGGAgccatttttttgcttttctgacCCAGAAATGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106510829

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU403100 True 1403 TUCP 0.47 2 8282960 8285204

Neighbor

gene id symbol gene type direction distance location
zgc:91944 zgc:91944,LOC108257190,LOC108425172,LOC103026000,LOC107710043,LOC107724285,LOC107702106 coding upstream 47224 8222160 ~ 8235736 (+)
hpca hpca,LOC108425130,LOC107556378,LOC107702105,LOC105005722 coding upstream 82166 8168217 ~ 8200794 (+)
nt5c1aa 5nt1a,LOC108425118,LOC107653825,LOC107710055,LOC107702103,LOC107724290 coding upstream 146142 8122029 ~ 8136818 (+)
si:dkey-284p5.3 NA coding upstream 176992 8101846 ~ 8105968 (+)
laptm4b laptm4b,LOC103028646,LOC107724295,LOC107702097,LOC107565197 coding upstream 188297 8082902 ~ 8094663 (+)
zbtb8b zbtb8b coding downstream 15986 8301190 ~ 8308111 (+)
fuca1.2 fuca1 coding downstream 24916 8310120 ~ 8318177 (+)
gmpr gmpr,LOC108257268,LOC108425204,LOC103024228,LOC107584250,LOC107696222,LOC107702110 coding downstream 33356 8318560 ~ 8329262 (+)
pag1 pag1 coding downstream 214592 8499796 ~ 8546369 (+)
znf704 znf704,LOC107584255 coding downstream 265853 8551057 ~ 8611452 (+)
G340146 NA non-coding upstream 45008 8233867 ~ 8237952 (+)
G340056 rpl30,LOC107710097,LOC107556383 non-coding upstream 182283 8097169 ~ 8100677 (+)
G340047 NA non-coding upstream 284672 7998083 ~ 7998288 (+)
G339965 NA non-coding upstream 393946 7888704 ~ 7889014 (+)
G339830 NA non-coding upstream 469096 7813632 ~ 7813864 (+)
G340197 NA non-coding downstream 114014 8399218 ~ 8411358 (+)
G340248 LOC108256763,LOC108425228,LOC103022454,LOC106515840,LOC107724303,LOC107087831,LOC107584252 non-coding downstream 204475 8489679 ~ 8491914 (+)
G340257 NA non-coding downstream 328282 8613486 ~ 8617041 (+)
G340297 NA non-coding downstream 383375 8668579 ~ 8668782 (+)
G340336 LOC108256786 non-coding downstream 559070 8844274 ~ 8845684 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 11461 8240697 ~ 8271499 (+)
G339324 NA other upstream 1565814 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 1666937 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1939051 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 3502574 4761313 ~ 4780386 (+)
sem1 NA other downstream 627724 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 833810 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 939400 9224604 ~ 9229638 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 1908543 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 2189279 10474483 ~ 10481970 (+)

Expression


Co-expression Network