G340336 (LOC108256786)


Basic Information

Item Value
gene id G340336
gene name LOC108256786
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8844274 ~ 8845684 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU403267
tgtcagatctttttccacctttaatgggGTAGAGCaatcaacaaaattcaagtaaaaacaGTAGAAATATTTTAAGGAAATATTGATGAATAGTTGATGGGTAGTTGGGATAGGATGAATagttccaaataccaatctattttggcacaaaacctgcaggtgtctgttagacagctgaagatgaagaaaaatttcaccttccagcacaataatGATACAAAGCgtacaaatccaagtcaacaaatgaatggcttcagaagtaGAAGATCAacgttttggaatggcccagtcagagcccagatttaaatcctatcaaaaatcTTAGGAACCTTTCATTCCTTTTCATATGTCAAATATGAATCATTGCACATTTGTAACAAAAATTGTTCACAAAGATTCCCACATATGCCTGAAAGTAGCTTTAACACCTGTGAAACCAGGTTGTtgtgagttttttctttttccctaaaatttgtttttcacttgaattttgttggttgctacaGTGCATCACATTACAAGTGGAAAGAGATCTGACATGATTAatattgatttcatttttttttttcatctcaaaaacctgcaattttaccaggggtgtgcagactttttatatccactgtatatgtgGATATGATGTTTGCATATGCAtatgttgctgcctcacagctccagggtctggTAATTGTGTCCTTGGAGTTAActggcaactctaaattgctcctaaaTGTGAATGATTCTGGAGTTCTGGAGTTTGGTGTATTCCAGtccaatttttttcttcttaatgttATGCCATTCCAGTTAAGCCATCTTTTTCTCTCAGCTGTACCTTTTTAATATGGTAGAGATGCAGTTTACCTTGCAAAGGTATCATGTCTCCCAGCCTCCTTCCTCTTCTCATCCAGGTCAATGAAGACCTTCTGAATGGATTCTACAGTCTGAGAAATGCTCAGGTGATCTTCCCGAACCCCTTGGACATCCATCATGGCCTGCTGCTCGTATGAGAGTCCACCCTCCTCCAGACCGCTGGCCTCAGTCACTGCGTGGAGTGCTGCTCGGTTCTGCAGCACAAGCAGACGCGTCTCCTCGAACTCCTCTGGCCCTGCTATGTCTTCCCAGCACACAGGAGAGGACGGTGGCAGCCAGAAGCGCTGAGTGCAGTTTGCTACATGTCCAGGTGTCTCCGTGACAAAGGGACTGTGAGCAGGGAAGCTGTGCAGCAGCTCATGCAGGCCGGAGCCCCAGTCCCAGTTTCTGTCCTCTATGTCCACGTCAATGCTGCCTCCAATGCGGCACACGGTGAGAAGGACCAGGAGAAACCATGCCATCCTGCTgcagctaagaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU403267 True 1353 lncRNA 0.43 2 8844274 8845684

Neighbor

gene id symbol gene type direction distance location
chrac1 chrac1,LOC107591666,LOC107580926,LOC107722130 coding upstream 1156 8839251 ~ 8843118 (+)
c23h6orf62 c24h6orf62,cunh6orf62,zgc:111986,LOC103042486,LOC107555566,LOC107724342,LOC107702127,LOC107743835 coding upstream 19449 8820384 ~ 8824825 (+)
ripor2 fam65b,LOC107555568,LOC102779249 coding upstream 29305 8767996 ~ 8814969 (+)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC108257412,LOC106570559 coding upstream 94048 8737159 ~ 8750226 (+)
hey1 hey1,LOC107584259,LOC107702120 coding upstream 125704 8714493 ~ 8718570 (+)
dlx5a dlx5,dlx5a,LOC107670186,LOC106570474 coding downstream 26911 8872595 ~ 8874442 (+)
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding downstream 188778 9034462 ~ 9053330 (+)
tfpi2 NA coding downstream 406422 9252106 ~ 9255479 (+)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding downstream 418077 9263761 ~ 9315951 (+)
LOC113536235 NA coding downstream 735231 9580915 ~ 9594532 (+)
G340297 NA non-coding upstream 175492 8668579 ~ 8668782 (+)
G340257 NA non-coding upstream 227233 8613486 ~ 8617041 (+)
G340248 LOC108256763,LOC108425228,LOC103022454,LOC106515840,LOC107724303,LOC107087831,LOC107584252 non-coding upstream 352360 8489679 ~ 8491914 (+)
G340197 NA non-coding upstream 432916 8399218 ~ 8411358 (+)
G340146 NA non-coding upstream 606322 8233867 ~ 8237952 (+)
G340339 NA non-coding downstream 5284 8850968 ~ 8859663 (+)
LOC117595890 NA non-coding downstream 30273 8875957 ~ 8891060 (+)
G340517 NA non-coding downstream 70922 8916606 ~ 8917800 (+)
LOC117595810 NA non-coding downstream 117253 8962937 ~ 8966727 (+)
G340574 asb4 non-coding downstream 208716 9054400 ~ 9058481 (+)
G340208 LOC108256789 other upstream 559070 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 572775 8240697 ~ 8271499 (+)
G339324 NA other upstream 2127128 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 2228251 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 2500365 6333989 ~ 6343909 (+)
sem1 NA other downstream 67244 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 273330 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 378920 9224604 ~ 9229638 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 1348063 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 1628799 10474483 ~ 10481970 (+)

Expression


Co-expression Network