sem1


Basic Information

Item Value
gene id sem1
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8912928 ~ 8915846 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU403492
CAAAATATGCGCATGCGCCATCGCTATTTCCATGGTTCTCTCGTGTTGAGGCTCACAGTGAGAAACTAACTAGCTGTCATGTCTGAGAAGAAACAAACTGTAGATTTGGGCTTGCTGGAGGAAGATGATGAATTTGAGGAATTTCCAGCTGAAGATTGGACGGGCCTGGACGAGGATGAGGACGCTCACGTGTGGGAAGATAACTGGGACGACGATAACGTAGAAGATGACTTCTCCAATCAGCTGAGAGCTGAACTTGAGAAGCATGGATACAAGATGGAGACGTCGTAACATTGACCATCACGTAACATGCTGATGACTGGATAATCACAGCTGAACATCGTCATTgtacaaatgtgatttttcttctttcctctgtAAGAAGTTAAGAGTGACAAGTGTTAACGGTGTGAAGAAATTGGAATAGAATtaggttttttattttgtgctcaCAAGAAACTGTTTGTATGTGTTAATAGTTGGTATATTAAAGCTT
>TU403493
GTTCTGGAGGCGGAACTAACGCCTCTTGGAACATGCGCGTGCGCACAAAATATGCGCATGCGCCATCGCTATTTCCATGGTTCTCTCGTGTTGAGGCTCACAGTGAGAAACTAACTAGCTGTCATGTCTGAGAAGAAACAAACTGTAGATTTGGGCTTGCTGGAGGAAGATGATGAATTTGAGGAATTTCCAGCTGAAGATTGGACGGGCCTGGACGAGGATGAGGACGCTCACGTGTGGGAAGATAACTGGGACGACGATAACGTAGAAGATGACTTCTCCAATCAGCTGAGAGCTGAACTTGAGAAGCATGGATACAAGATGGAGACGTCGTAACATTGACCATCACGTAACATGCTGATGACTGGATAATCACAGCTGAACATCGTCATTgtacaaatgtgatttttcttctttcctctgtAAGAAGTTAAGAGTGACAAGTGTTAACGGTGTGAAGAAATTGGAATAGAATtaggttttttattttgtgctcaCAAGAAACTGTTTGTATGTGTTAATAGTTGGTATATTAAAGCTT
>XM_026929430.2
TGCGCATGCGCCATCGCTATTTCCATGGTTCTCTCGTGTTGAGGCTCACAGTGAGAAACTAACTAGCTGTCATGTCTGAGAAGAAACAAACTGTAGATTTGGGCTTGCTGGAGGAAGATGATGAATTTGAGGAATTTCCAGCTGAAGATTGGACGGGCCTGGACGAGGATGAGGACGCTCACGTGTGGGAAGATAACTGGGACGACGATAACGTAGAAGATGACTTCTCCAATCAGCTGAGAGCTGAACTTGAGAAGCATGGATACAAGATGGAGACGTCGTAACATTGACCATCACGTAACATGCTGATGACTGGATAATCACAGCTGAACATCGTCATTgtacaaatgtgatttttcttctttcctctgtAAGAAGTTAAGAGTGACAAGTGTTAACGGTGTGAAGAAATTGGAATAGAATtaggttttttattttgtgctcaCAAGAAACTGTTTGTATGTGTTAATAGTTGGTATATTAAAGCTTTT

Function

NR:

description
PREDICTED: 26S proteasome complex subunit DSS1

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU403492 False 496 TUCP 0.42 3 8912973 8915844
TU403493 True 541 TUCP 0.43 3 8912928 8915844
XM_026929430.2 False 491 mRNA 0.42 3 8912980 8915846

Neighbor

gene id symbol gene type direction distance location
dlx5a dlx5,dlx5a,LOC107670186,LOC106570474 coding upstream 38486 8872595 ~ 8874442 (+)
chrac1 chrac1,LOC107591666,LOC107580926,LOC107722130 coding upstream 69810 8839251 ~ 8843118 (+)
c23h6orf62 c24h6orf62,cunh6orf62,zgc:111986,LOC103042486,LOC107555566,LOC107724342,LOC107702127,LOC107743835 coding upstream 88103 8820384 ~ 8824825 (+)
ripor2 fam65b,LOC107555568,LOC102779249 coding upstream 97959 8767996 ~ 8814969 (+)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC108257412,LOC106570559 coding upstream 162702 8737159 ~ 8750226 (+)
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding downstream 118616 9034462 ~ 9053330 (+)
tfpi2 NA coding downstream 336260 9252106 ~ 9255479 (+)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding downstream 347915 9263761 ~ 9315951 (+)
LOC113536235 NA coding downstream 665069 9580915 ~ 9594532 (+)
efcab1 efcab1 coding downstream 681723 9597569 ~ 9600349 (+)
LOC117595890 NA non-coding upstream 21868 8875957 ~ 8891060 (+)
G340339 NA non-coding upstream 53265 8850968 ~ 8859663 (+)
G340336 LOC108256786 non-coding upstream 67244 8844274 ~ 8845684 (+)
G340297 NA non-coding upstream 244146 8668579 ~ 8668782 (+)
G340257 NA non-coding upstream 295887 8613486 ~ 8617041 (+)
G340517 NA non-coding downstream 760 8916606 ~ 8917800 (+)
LOC117595810 NA non-coding downstream 47091 8962937 ~ 8966727 (+)
G340574 asb4 non-coding downstream 138554 9054400 ~ 9058481 (+)
G340600 casd1,LOC107591593,LOC107665666,LOC107731667 non-coding downstream 219203 9135049 ~ 9135716 (+)
G340594 casd1 non-coding downstream 221853 9137699 ~ 9139548 (+)
G340208 LOC108256789 other upstream 627724 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 641429 8240697 ~ 8271499 (+)
G339324 NA other upstream 2195782 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 2296905 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 2569019 6333989 ~ 6343909 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 203168 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 308758 9224604 ~ 9229638 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 1277901 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 1558637 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 2376445 11292291 ~ 11294356 (+)

Expression


Co-expression Network