G340574 (asb4)


Basic Information

Item Value
gene id G340574
gene name asb4
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9054400 ~ 9058481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU403554
AGCTGATGTATCCTTGTTGTGTTGTGGAGTTTGTATTGTAACTCATTTGCAAATATGTTGCGCTACAGAGCCCATGATAATGACTAGTGGGAGGTGTTGATGAGTGTCTCCATATTTTTGTTTAAGTGGGTATGCCCTCTTCTAATCTGATTGTATTGTAATCTTGTATTGATAGTTCCTtagtcttcatgatgctgtttgatTAGAGtttgttctctaacaaactctggtgccttccaggaacaggtgtatttatattgagatcatatGACAACAGATGACATGTGACAACCATGTGACATCTTATAGCAACTGGTGGCACCAGACATTATTTATGAGTTTCATagcaatgggggtgaatacttccaaaacttttccttttgtttatttgtgaataattttaaaactataaCTTTTAAAACTAAGACTTTTCCCTCACTTCAGttttatgggctattttgtgtagattcatgtcATAATCCCAATTATGCCCATTTCCAGGtgataacactacaaaatgtggaaatgttcaagAGGGTTAATACTTAAGCAAAGCACGGCAGCTTCTCTGAAATCTTTGTGTACTACTTGCCAGTTTTTTACTATTGATATTAATGGTTCCAGTGTTAAATGTTGGTTCTAGAACTTTTTGCTGTGTCATCCTTCCACATATCCTTCTTCTCCATGCCTGTTACAAAAGAAGAGCTGGCTTTCTGGCATGGAGCCAGTGTGTAGTCCTGGAGTTCAGCCACGTGCCTAGAACACtgtgttctctctttctttggtTCTCCTGCCGTACCAGTCATAAACGCTCATGTGGCCACAACACAGTCTTATTTAAGGAACATGTTTCTGGATTACTCCCTGACCTTTCACTTAGTAACACCAAGCTGCTGTTTTCAAAGATGCCGTCATCtctgaataaatgtttatgtaagaGCAAGAACATGCACACGGATGAGTATATATGGAGTTCATGCTACTACTAGGAATTTGTTCTTTGGTCTGATGCAGGGGTCTGTAACTTGATGGTTGGTTACGAGCTTCTTTTTCTGCTCTGAATGGAAACGGGATGTGCACTGAGGAAAGTCATTACTTCCAGATGACACTCTGTGGGTGATTGATTACACGTTCCTCTAAGCTCACACGCAAACACACCCAGAACTCTGACCTCTGAGTAGTGAGAGACAGTAGCAGGAGGTGACACAAGTTTACATATAACAGGATCAGCTCAGAGTAAATGGTTGATCAGAACCTTTGTTAAAGGCTTGCTGAGGTCAGTGACAGCCTGAGTGGTGTTTACAAATGTAAACTAGTGGATGTAAATTTCAACGTAGCTACTTTACGATGTGTTAATTTATGAATGTAGTTGACACAGCAACATCGCATCCTTGTCAATTCTTTAACTTCTCTGAAACGGCTTGAGAAAGAGTTCAAAAGGATTAGTGGCTTAAATACCTCTTTTCATTCAGCTGCCAACTACAAAGCTCTGCTGACATCATGCCTCACATTTATCctcttattttaaacaaaactctCTTATATTATTAACTCCCTGAAATCTGTACTGAAATCTTATGGCTCATAACCGTTTGTTTAGATGAATGcagaatgagatttttttttagtttgctaAGACAAATGCCATATTTATCACTGATGCTctcaaacatgttttttttttttttcattgataaATATATTGCCTTCAAAGGAATAATTTCAAAGTGAATCTAACAATAATGGTTTACAGTATCTTGAACAATTTGTGAACATTTCAATATTAGAAAAGGCCAGACCATAAAACCTGCTCACATATATGTTcttagaaataaatacactgcCAATTAAAAGTTTTTGAACACTTGGAAGTTTTTTaggttttattacagtttacgcACTACTGAGAAtcaaatgaggaaaaaagtaaataagcaATCCATGAAATACCTAAATCTCTGTATTTAAGGACTTCTTCATCGTCCACTTTCAGATTCTAATGGGATTCTAAATGAGTGCTATTAAAGGCAAGTGCACTTGTTTGGTAAAGCCGTTACTCTAAGACTGTTAGTTATTGTAAGCCTGGATTTGTCTTACAGTTAATGTTAGTCAGTGTTAGTAGGCTATCAGCTGTAAGAATATATGGTGTGTGCTTCATGTACCTAATTAGAATGGTCCAGATAAATCTAGTCTTTTCCAGTTAGCTCTACATTTTTTCCCAATAAAATAAACgtatttttcaaacaaacacttttctgttcatttatacCTATTTCCTGCTTAGATTTTCTAATACTAGAGTAATTCACTTGACcctgttatttgttatttaactCAGAATGTTAATATAGGGTGTTGGAAAAACTTCTGAATGGCAGTGTATTTTATAAGAATGAAAATACTGTAGATATGACCAAAGCTGCAGTGCAAACTCAAGCATTTTCCTGAGAGCACTTATATCCCAGAAGGTTTAATGTGGACAGAGTTTGAGATTGGCACATTCTAAATTCACCTTTGGGCCAATACAGTCACTAGTATACGATTCCCACAGGTTCGAGCAGTATGTATCGTTTGATTGATGGAGGCAGTGGGAGTCGTTTAATGCCTGATTCACAGCAGCAGCCCATCGCCATACGGATGGCACATCTGGCCAGGTGTTGCAGAGAACGCGGACTGGCGCAGGCAGCAAACAACGAGTCATAAAACTTCCCGTGGCTCTTaatgaaagaaggagagaaatgtAAGGTTCATAACTGATaaagaatatactgtatatgtacataacAGTGGATAGACAGGCTGTTCAATGCATTATGGTAAACTGCCCACATTCCAGCAGCAAGGTTGTTCAGAAAATTATGTTTGTAGTTCAAATATTAGAACATGCCCACTTTAAAAGTGTTCCTTATGATATATTTGGATCGTTAACATGTTCAGCTTCCTAATGGGTTTAGAAAACTTTTGGAAATGGCAAATCCTCTTttgaacctttaagggttctcccaGAAGGACAAAGGAAATAATGCTTTAGAGTGATAGATTGAAACTTTTTCTCTTATggactaaataaaataatatactcCAGTCAAGTTGTTTTCACACTTGACCCAAACACCTGAGCATTTCACACAAACAAATTTCCTTCCAAGTTGCAAAATAACGTGCTATGTATAATCACATTTTTCAATGCCCAAACCAGGAAGTGAAACACTGTCACTAAAGGTACAGTGCACACCCAAGTTCACTTGAAATTTTTAGGTAAACCACATCAGTTGCCTTGACCACAGCTGGGCACAAAAACAGCATTCACACTCGACCAGATGTACTTAACTCTCAGCACAAAGAATTGGTTAAAAAAGACACCCAATTCCAAACACTTTGGGCCTCACTGAAAAACCTTGTATGTTGTGTCAGGAATAGCTTCCCTCCATTTTGGGGTACTCATGAGATGCTCATAGGAATTTGCCATCACCTCAACTGTCTTGGGGTCATCATGGCAAATCTCCAACACCTAATTAATAGAAAGGATAAAGTGTTATTCTCAatcaaataataacaaaaatacgaGATTAAGACATTTTTCAGTGGTAAATTAGCAGTGGACTGTAACTGAACTGTGTAATTTGTACCTTGTAGAAATGTTTTGGGTAGATTCTGGCTGCTCCATAGTTAAGCAGGAGCTGGAAGCAGCGATATGGTACACAGTAAGGCCGCATCTTCACCATTCTTAGCACATACTGAAGGGCTGCGCAACCGTTCATATCCATGATCTTGGGATCAGCCCCAGCATCAAGCAGAATCTTCATCAGCACTTGGTCGCAGTTCCATGAGGCTTTAtgcagtgctgtttttttgtcatCTTCCTGGAGGTTTGGGTTGGCCCCATAGTCCAGCAGCATGCGGCACACAAGATGGTGCTGCTCGCTGTAAGTCTGCTCACGGGCATCCATAGCCCAGAAGGCAGCCGTGATCAAAGGGGTCTCCATATGGGCATTGAGCATATTCACATCAGCACCATGCGCAGCGTAAAGGCCAACCAGCTCAGAGATACCAAGGCGTGCGGCTATGTGTAGTGGAGTGTC

Function

symbol description
asb4 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB4 (ankyrin repeat and SOCS box containing 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU403554 True 4082 lncRNA 0.39 1 9054400 9058481

Neighbor

gene id symbol gene type direction distance location
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding upstream 1070 9034462 ~ 9053330 (+)
dlx5a dlx5,dlx5a,LOC107670186,LOC106570474 coding upstream 179958 8872595 ~ 8874442 (+)
chrac1 chrac1,LOC107591666,LOC107580926,LOC107722130 coding upstream 211282 8839251 ~ 8843118 (+)
c23h6orf62 c24h6orf62,cunh6orf62,zgc:111986,LOC103042486,LOC107555566,LOC107724342,LOC107702127,LOC107743835 coding upstream 229575 8820384 ~ 8824825 (+)
ripor2 fam65b,LOC107555568,LOC102779249 coding upstream 239431 8767996 ~ 8814969 (+)
tfpi2 NA coding downstream 193625 9252106 ~ 9255479 (+)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding downstream 205280 9263761 ~ 9315951 (+)
LOC113536235 NA coding downstream 522434 9580915 ~ 9594532 (+)
efcab1 efcab1 coding downstream 539088 9597569 ~ 9600349 (+)
pex1 pex1 coding downstream 545990 9604471 ~ 9618025 (+)
LOC117595810 NA non-coding upstream 87673 8962937 ~ 8966727 (+)
G340517 NA non-coding upstream 136600 8916606 ~ 8917800 (+)
LOC117595890 NA non-coding upstream 163340 8875957 ~ 8891060 (+)
G340339 NA non-coding upstream 194737 8850968 ~ 8859663 (+)
G340336 LOC108256786 non-coding upstream 208716 8844274 ~ 8845684 (+)
G340600 casd1,LOC107591593,LOC107665666,LOC107731667 non-coding downstream 76568 9135049 ~ 9135716 (+)
G340594 casd1 non-coding downstream 79218 9137699 ~ 9139548 (+)
G340597 NA non-coding downstream 81958 9140439 ~ 9141145 (+)
G340596 NA non-coding downstream 89330 9147811 ~ 9148293 (+)
G340592 col1a2,LOC107722140,LOC107667770,LOC107731699,LOC107669816 non-coding downstream 98977 9157458 ~ 9177134 (+)
sem1 NA other upstream 138554 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 769196 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 782901 8240697 ~ 8271499 (+)
G339324 NA other upstream 2337254 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 2438377 6604605 ~ 6616023 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 60533 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 166123 9224604 ~ 9229638 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 1135266 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 1416002 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 2233810 11292291 ~ 11294356 (+)

Expression


Co-expression Network