sgce (sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676)


Basic Information

Item Value
gene id sgce
gene name sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9119014 ~ 9134179 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU403581
AGGTGGAGTGAATCCATCAGATTATAGCTGCAGTTTGGCTTAAACGCCACTTCAAGAAATAAAAGGCTTACTTTTACACAAGATCTTGTTTGCTTTTTATCTTGTCTTCCTATAATGGAAGAAAAGGCTAAAATAGCGCAGACTTTGTACATCTGCAAAATACTATGACTATAAAATGAAGCTATGgtacaaaattaaattacaaatgtcTGATAATTGTAGCTAGCATCCAGCTAGTGGCCCTtcgatgaggatgatgaagattgtATTggcacaatataaataaaaatctatctaCGCAAATAAGGACACTATACACCCTTATTCTACAGTTCCCAAATAATGTTACCAAACAGcataaataaatccaaatgGAGAATTAGATCAGATAAACATGGCTGTAATTTAACCAAATAAGCCGATTTACTCTTTCACCAGCAGGATTGCTTAAAACTGCTattgctctaaaaaaaaaaaaaattaacagacTTAGAAAAACTACTTCTCTCCATCTTGTAGCATAGATTTATACCCTTTACCCACATTTTACCAGCTGCCATTGTCACAAACAAGAAAATGTGTACAAGTGACTTGTCTAAATTTACTCCCATGCTTTCCCACTTTCAGTTGAAGGATTAAAGCTCTGTATTTCTAAACTCCCTGTTAGTAGCTTTACAAGGTAAAACACAACCTCCTTATAGCATCAATATACAGTAACAGAGTAAAGATTTACATTCACAATACAGGGGATAGTATGTTTAGCTTTTTTTAGCATTAGCTTACTGAAATGTAAATGGTAGAAAGCAGAtacatacagcaaaaaaaatgatttgctatttttcttataaaaatTCATAACTTCACTAAAGCTTAGCTTAGATTGGTCTAATGGAGCTCCTGTACTGTTTAAAGCCTTTCCCTACTTCCTTCATCGGTGGCACTTTCCCTCTcgcctgtttttttgtttttgttttgttttttttggttcacCATCAAtattcaaatcacaggattataacAACAAAGCACCTTTACTTCACTTGGTTAAAGATATGtgtaaaaaatgttataataaataacagggTAATAAACTGTCACACAACTCTAGATGTACattaatgtacagtgtgttgGGA
>TU403587
GTGTGCCTCAGGTGGATATTACTAAAGTCATCCCTGTGCACAACAGCCGTCCGGAACCGGGCACTGGAGTGCTGCCAGACGTCGGTGACTACAATCCGCCCTCTGAGTCACTGAAAAGTAAAGACTATTTTGCTGACTTCCTGGTCACATTGGCTGTGCCGTCTGCTGTTGCTCTGGTTCTCTTCGTCATCCTGGGTTATTCGATGTGCTGTCGGCGAGAAGGAGTCATCCAGCTGGTGCACCACAGCTCCATTCAGAAGTCAACAAAGGAGCTGCGCAGCATGTCAAAGAACAGGGAGATCTCCTGGCCTCTCTCCACGCTGCCTGTGTTCAACCCTGTGAGTGGAGAGGTGGTGCCACCAATCCACCCAGAAAACTACGAGACTACCAGCATGCCACTCATGCAGACCCAGACGTGAGTGCCACACTGTGATTTCTGTCTCTGCTCTCAGACCATTCTGCTTCTTCTGCCTACAGGCATTAAGAGagcattacattttttctttttaaagtaaCATTGTCTGCACATTTCAGTGCAAGTCAAAATTAAATATGTGCACTTCTAAGATATGGCACAAGGCATAAAACTGCTCTTTCAGATTCAAAGTGGTTGGTTTTAACAATGAAACACCTTTGTGGTACTGGCTGAGTTGTAAATAgttaccacagtgctgttgaattcttgattgtgattggtgagaaaatgttgaaaaaatgaacagttttCTAAAaaagctctgacagcagttctggctgcaagggtTATATTatgctcattttaatgttttcttttttataataacATCTTTCACACAGCctctccacataaacagataaaaaaacacatgtaattgttgatatggtgacggtTTCTTTGGGGAAACgttaatttagcatttttggaaggagtctccagtgccggagctttgttacagtcagaggtaaagctgtaactaagtttttcaacacaggaaagtctttaattaatggaattttatttatatagcgcttttaacaatggacattgtcacaataGGTATAGAGTATTCAGGACtgctttttgcagtttcttggtaacaagctaGATTTTGTGTATTATTAACTTGGAGAGAGAATAAACGGAGGCTGATTTTAGATTTAGCACACAACAACCAAATGAGTATGAGTTGTAAAATAGTCCAGGGTAAGATATAAGATTAGAAGTCTATAAACTGTAGCACATTTGTGGAATATTAGAgttctgtatattttaaacAGATATATTAAAACCAATTTTGTTTTCTTGATGTCCTGTTAAAGCCTTTGGGATGTGACACTAGGAGCAACCATTTCCTTAAAAGAACACCAGCTCGAATTCAAATTGCAGTAAAATGAGCATGTTTGGTTAAGAAACCACTGGAATTTTCAGGACAACAAGCAAGTACATTAAGCATCCACCTCAAAATCCTTAGAGAAGTCTGTGCAGTTAATGCTCAGTATAAGGAATGACTCATCATTTAATTAATACTGCAGTTTTAGTAAAGCTGTTTCTATTCACAGAAATCTTCAAAATCAAATGCAGATACCACAGCAGCAGCCTTCGGGTAAGTAGACATCAACTTCAGCGTATTGTAGCCATACACACAAGCAAAACTGACAGACAGCTCCAGAATCATTGGCACttgtaaagaaaattattataaaataaatagtatacacaatgatatattgatatagaatatttctgtttttctctcctgaaGATTGTTCACCAAATATTAACCGTGG
>XM_026929620.2
GCTCCCACAATGCGCCGGGCTCGGAGAGGTGGGAGGGAGGAATTTCAGCTAACGGGAGGGATGCTGATGGCTGCTCAGTGCCTGCTATCATCACCGAAAACTCACACCTGTAACGCAAACCCGCACGGAGACCACTGAACCATGGACCCTCTGAGCGTCTTCGTGTGGCTGTTAGTAGCTTGTGAAGGCCATAGTCAAATCCAGGCTTTAGTCGACTCTACACAGAAGGCTGTGCCTCATACGGGCGTGGTCACCATCGTCTCTCGCTCGCATGCGGACCGGAACGTCTACCCTTCAGCTGGAGTGCTGTTTGTCCATGTCCTGGAGAGGGAATACTTTAAAGGGGAATTTCCTCCTTATCCAAAGCTAGGGGATACCAGCAATGACCCAATCACCTTTAATACCAACCTGAAGGGTTATCCAGACAGGCCCGGGTGGCTGCGCTACATCCAGCGAACTGCACACAGTGATGGAGTCCTTTACGGCTCCCCCACTGCGGAGCACGCGGGCAAACCAACCATCATCGAGATTACTGCCTATAACAGACGCACTTTCGAAACAGCAAGGCACAATTTGGTCATTAACATCATGGGTACAGAAGAATTCCCCTTGCCGTATCAGGCCGagttttacattaaaaacatgaatgTAGAGGAGATGCTAGCCAGTGAGGTACTGGGAGACTTCCTGGGTGCTGTGAAGAACGTCTGGCAGCCTGAGAGGCTCAATGCCATTAACATCACTTCAGCGCTAGACCGGGGTGGACGTGTGCCCCTGCCTATCAACAACCTGAAAGAGGGCGTGTATGTGATGGTGGGAGCAGACGTGCCGTTCTCATCATGCCTGCGTGAGGTGGAGAGTCCTCAGAACCAGCTGCGCTGCAGTCAGGAGATGGAGCCAGTCATCAGCTGTGACAAGAAGTTCAGAGCTCAATTCCACATCGACTGGTGCAAAATCTCTTTGGTGGATATTACTAAAGTCATCCCTGTGCACAACAGCCGTCCGGAACCGGGCACTGGAGTGCTGCCAGACGTCGGTGACTACAATCCGCCCTCTGAGTCACTGAAAAGTAAAGACTATTTTGCTGACTTCCTGGTCACATTGGCTGTGCCGTCTGCTGTTGCTCTGGTTCTCTTCGTCATCCTGGGTTATTCGATGTGCTGTCGGCGAGAAGGAGTgCGAAAAAGAAACATGCAAACACCAGACATCCAGCTGGTGCACCACAGCTCCATTCAGAAGTCAACAAAGGAGCTGCGCAGCATGTCAAAGAACAGGGAGATCTCCTGGCCTCTCTCCACGCTGCCTGTGTTCAACCCTGTGAGTGGAGAGGTGGTGCCACCAATCCACCCAGAAAACTACGAGACTACCAGCATGCCACTCATGCAGACCCAGACAAATCTTCAAAATCAAATGCAGATACCACAGCAGCAGCCTTCGGGAGATAATTACAGTTTGTCAACATTTCGAAGGCTGGAGGTAAATGGTATTCCTGAAGACAGGAAAGTGGCTGAAGCGCTGAATTTATGAGGAGATCTCTCATCACTCGCAGCTTCCTGTGcctgtgtaatgtgtgtttccACATTGTGCCAAATCTGCATATGCTATAGCTCTGTGATCCTGTGCAGCACCACCGAGATGTAGTCCAAGCAGCAGCTGAGCTAATGATGGCTACGCTCACATGACCATATCTGAACTATTTAAATATCTGAAGGTATTTTGAGGTAATTGTCTTCTTGGGACCATTTAAAGCAACACATTGAAGCTTGAACAGACTTTCATTGAATACGCAACTTtagttttttcttctcttaCTCTACTAAAGATGTTTTGATAGTTAATAAACTTGTCCATGTAAAAATATTCTATCTGTAGTATCATGAGCATGTGTAACAATTTAGAATTGTCATGTGTGCCAGTGGATatgctggggggaaaaaaaacagtccaaaGTATGTTCAGCAAGGTGTTTTATCACTGACAATGATTTAACAACAAACCAGcatttctaaaagaaaatacatcCTTTTCACATTTCAGGacaaaatgattatatttacatCAGCATGGCATgaatcttattattttttttttttacagaggtCCAAACTAAACTATATAATACATTTGAACAAagtcttaaaaaataaaatccacacaTTTATAATTGGATAAATAGCTGTAAGGTGGAGTGAATCCATCAGATTATAGCTGCAGTTTGGCTTAAACGCCACTTCAAGAAATAAAAGGCTTACTTTTACACAAGATCTTGTTTGCTTTTTATCTTGTCTTCCTATAATGGAAGAAAAGGCTAAAATAGCGCAGACTTTGTACATCTGCAAAATACTATGACTATAAAATGAAGCTATGgtacaaaattaaattacaaatgtcTGATAATTGTAGCTAGCATCCAGCTAGTGGCCCTtcgatgaggatgatgaagattgtATTggcacaatataaataaaaatctatctaCGCAAATAAGGACACTATACACCCTTATTCTACAGTTCCCAAATAATGTTACCAAACAGcataaataaatccaaatgGAGAATTAGATCAGATAAACATGGCTGTAATTTAACCAAATAAGCCGATTTACTCTTTCACCAGCAGGATTGCTTAAAACTGCTattgctctaaaaaaaaaaaaaattaacagacTTAGAAAAACTACTTCTCTCCATCTT
>XM_026929622.2
TCCCACAATGCGCCGGGCTCGGAGAGGTGGGAGGGAGGAATTTCAGCTAACGGGAGGGATGCTGATGGCTGCTCAGTGCCTGCTATCATCACCGAAAACTCACACCTGTAACGCAAACCCGCACGGAGACCACTGAACCATGGACCCTCTGAGCGTCTTCGTGTGGCTGTTAGTAGTGGTCACCATCGTCTCTCGCTCGCATGCGGACCGGAACGTCTACCCTTCAGCTGGAGTGCTGTTTGTCCATGTCCTGGAGAGGGAATACTTTAAAGGGGAATTTCCTCCTTATCCAAAGCTAGGGGATACCAGCAATGACCCAATCACCTTTAATACCAACCTGAAGGGTTATCCAGACAGGCCCGGGTGGCTGCGCTACATCCAGCGAACTGCACACAGTGATGGAGTCCTTTACGGCTCCCCCACTGCGGAGCACGCGGGCAAACCAACCATCATCGAGATTACTGCCTATAACAGACGCACTTTCGAAACAGCAAGGCACAATTTGGTCATTAACATCATGGGTACAGAAGAATTCCCCTTGCCGTATCAGGCCGagttttacattaaaaacatgaatgTAGAGGAGATGCTAGCCAGTGAGGTACTGGGAGACTTCCTGGGTGCTGTGAAGAACGTCTGGCAGCCTGAGAGGCTCAATGCCATTAACATCACTTCAGCGCTAGACCGGGGTGGACGTGTGCCCCTGCCTATCAACAACCTGAAAGAGGGCGTGTATGTGATGGTGGGAGCAGACGTGCCGTTCTCATCATGCCTGCGTGAGGTGGAGAGTCCTCAGAACCAGCTGCGCTGCAGTCAGGAGATGGAGCCAGTCATCAGCTGTGACAAGAAGTTCAGAGCTCAATTCCACATCGACTGGTGCAAAATCTCTTTGGTGGATATTACTAAAGTCATCCCTGTGCACAACAGCCGTCCGGAACCGGGCACTGGAGTGCTGCCAGACGTCGGTGACTACAATCCGCCCTCTGAGTCACTGAAAAGTAAAGACTATTTTGCTGACTTCCTGGTCACATTGGCTGTGCCGTCTGCTGTTGCTCTGGTTCTCTTCGTCATCCTGGGTTATTCGATGTGCTGTCGGCGAGAAGGAGTgCGAAAAAGAAACATGCAAACACCAGACATCCAGCTGGTGCACCACAGCTCCATTCAGAAGTCAACAAAGGAGCTGCGCAGCATGTCAAAGAACAGGGAGATCTCCTGGCCTCTCTCCACGCTGCCTGTGTTCAACCCTGTGAGTGGAGAGGTGGTGCCACCAATCCACCCAGAAAACTACGAGACTACCAGCATGCCACTCATGCAGACCCAGACAAATCTTCAAAATCAAATGCAGATACCACAGCAGCAGCCTTCGGGAGATAATTACAGTTTGTCAACATTTCGAAGGCTGGAGGTAAATGGTATTCCTGAAGACAGGAAAGTGGCTGAAGCGCTGAATTTATGAGGAGATCTCTCATCACTCGCAGCTTCCTGTGcctgtgtaatgtgtgtttccACATTGTGCCAAATCTGCATATGCTATAGCTCTGTGATCCTGTGCAGCACCACCGAGATGTAGTCCAAGCAGCAGCTGAGCTAATGATGGCTACGCTCACATGACCATATCTGAACTATTTAAATATCTGAAGGTATTTTGAGGTAATTGTCTTCTTGGGACCATTTAAAGCAACACATTGAAGCTTGAACAGACTTTCATTGAATACGCAACTTtagttttttcttctcttaCTCTACTAAAGATGTTTTGATAGTTAATAAACTTGTCCATGTAAAAATATTCTATCTGTAGTATCATGAGCATGTGTAACAATTTAGAATTGTCATGTGTGCCAGTGGATatgctggggggaaaaaaaacagtccaaaGTATGTTCAGCAAGGTGTTTTATCACTGACAATGATTTAACAACAAACCAGcatttctaaaagaaaatacatcCTTTTCACATTTCAGGacaaaatgattatatttacatCAGCATGGCATgaatcttattattttttttttttacagaggtCCAAACTAAACTATATAATACATTTGAACAAagtcttaaaaaataaaatccacacaTTTATAATTGGATAAATAGCTGTAAGGTGGAGTGAATCCATCAGATTATAGCTGCAGTTTGGCTTAAACGCCACTTCAAGAAATAAAAGGCTTACTTTTACACAAGATCTTGTTTGCTTTTTATCTTGTCTTCCTATAATGGAAGAAAAGGCTAAAATAGCGCAGACTTTGTACATCTGCAAAATACTATGACTATAAAATGAAGCTATGgtacaaaattaaattacaaatgtcTGATAATTGTAGCTAGCATCCAGCTAGTGGCCCTtcgatgaggatgatgaagattgtATTggcacaatataaataaaaatctatctaCGCAAATAAGGACACTATACACCCTTATTCTACAGTTCCCAAATAATGTTACCAAACAGcataaataaatccaaatgGAGAATTAGATCAGATAAACATGGCTGTAATTTAACCAAATAAGCCGATTTACTCTTTCACCAGCAGGATTGCTTAAAACTGCTattgctctaaaaaaaaaaaaaattaacagacTTAGAAAAACTACTTCTCTCCATCTT
>XM_034298368.1
TGCTCCCACAATGCGCCGGGCTCGGAGAGGTGGGAGGGAGGAATTTCAGCTAACGGGAGGGATGCTGATGGCTGCTCAGTGCCTGCTATCATCACCGAAAACTCACACCTGTAACGCAAACCCGCACGGAGACCACTGAACCATGGACCCTCTGAGCGTCTTCGTGTGGCTGTTAGTAGCTTGTGAAGGCCATAGTCAAATCCAGGCTTTAGTCGACTCTACACAGAAGGCTGTGCCTCATACGGGCGTGGTCACCATCGTCTCTCGCTCGCATGCGGACCGGAACGTCTACCCTTCAGCTGGAGTGCTGTTTGTCCATGTCCTGGAGAGGGAATACTTTAAAGGGGAATTTCCTCCTTATCCAAAGCTAGGGGATACCAGCAATGACCCAATCACCTTTAATACCAACCTGAAGGGTTATCCAGACAGGCCCGGGTGGCTGCGCTACATCCAGCGAACTGCACACAGTGATGGAGTCCTTTACGGCTCCCCCACTGCGGAGCACGCGGGCAAACCAACCATCATCGAGATTACTGCCTATAACAGACGCACTTTCGAAACAGCAAGGCACAATTTGGTCATTAACATCATGGGTACAGAAGAATTCCCCTTGCCGTATCAGGCCGagttttacattaaaaacatgaatgTAGAGGAGATGCTAGCCAGTGAGGTACTGGGAGACTTCCTGGGTGCTGTGAAGAACGTCTGGCAGCCTGAGAGGCTCAATGCCATTAACATCACTTCAGCGCTAGACCGGGGTGGACGTGTGCCCCTGCCTATCAACAACCTGAAAGAGGGCGTGTATGTGATGGTGGGAGCAGACGTGCCGTTCTCATCATGCCTGCGTGAGGTGGAGAGTCCTCAGAACCAGCTGCGCTGCAGTCAGGAGATGGAGCCAGTCATCAGCTGTGACAAGAAGTTCAGAGCTCAATTCCACATCGACTGGTGCAAAATCTCTTTGGTGGATATTACTAAAGTCATCCCTGTGCACAACAGCCGTCCGGAACCGGGCACTGGAGTGCTGCCAGACGTCGGTGACTACAATCCGCCCTCTGAGTCACTGAAAAGTAAAGACTATTTTGCTGACTTCCTGGTCACATTGGCTGTGCCGTCTGCTGTTGCTCTGGTTCTCTTCGTCATCCTGGGTTATTCGATGTGCTGTCGGCGAGAAGGAGTCATCCAGCTGGTGCACCACAGCTCCATTCAGAAGTCAACAAAGGAGCTGCGCAGCATGTCAAAGAACAGGGAGATCTCCTGGCCTCTCTCCACGCTGCCTGTGTTCAACCCTGTGAGTGGAGAGGTGGTGCCACCAATCCACCCAGAAAACTACGAGACTACCAGCATGCCACTCATGCAGACCCAGACAAATCTTCAAAATCAAATGCAGATACCACAGCAGCAGCCTTCGGGAGATAATTACAGTTTGTCAACATTTCGAAGGCTGGAGGTAAATGGTATTCCTGAAGACAGGAAAGTGGCTGAAGCGCTGAATTTATGAGGAGATCTCTCATCACTCGCAGCTTCCTGTGcctgtgtaatgtgtgtttccACATTGTGCCAAATCTGCATATGCTATAGCTCTGTGATCCTGTGCAGCACCACCGAGATGTAGTCCAAGCAGCAGCTGAGCTAATGATGGCTACGCTCACATGACCATATCTGAACTATTTAAATATCTGAAGGTATTTTGAGGTAATTGTCTTCTTGGGACCATTTAAAGCAACACATTGAAGCTTGAACAGACTTTCATTGAATACGCAACTTtagttttttcttctcttaCTCTACTAAAGATGTTTTGATAGTTAATAAACTTGTCCATGTAAAAATATTCTATCTGTAGTATCATGAGCATGTGTAACAATTTAGAATTGTCATGTGTGCCAGTGGATatgctggggggaaaaaaaacagtccaaaGTATGTTCAGCAAGGTGTTTTATCACTGACAATGATTTAACAACAAACCAGcatttctaaaagaaaatacatcCTTTTCACATTTCAGGacaaaatgattatatttacatCAGCATGGCATgaatcttattattttttttttttacagaggtCCAAACTAAACTATATAATACATTTGAACAAagtcttaaaaaataaaatccacacaTTTATAATTGGATAAATAGCTGTAAGGTGGAGTGAATCCATCAGATTATAGCTGCAGTTTGGCTTAAACGCCACTTCAAGAAATAAAAGGCTTACTTTTACACAAGATCTTGTTTGCTTTTTATCTTGTCTTCCTATAATGGAAGAAAAGGCTAAAATAGCGCAGACTTTGTACATCTGCAAAATACTATGACTATAAAATGAAGCTATGgtacaaaattaaattacaaatgtcTGATAATTGTAGCTAGCATCCAGCTAGTGGCCCTtcgatgaggatgatgaagattgtATTggcacaatataaataaaaatctatctaCGCAAATAAGGACACTATACACCCTTATTCTACAGTTCCCAAATAATGTTACCAAACAGcataaataaatccaaatgGAGAATTAGATCAGATAAACATGGCTGTAATTTAACCAAATAAGCCGATTTACTCTTTCACCAGCAGGATTGCTTAAAACTGCTattgctctaaaaaaaaaaaaaattaacagacTTAGAAAAACTACTTCTCTCCATCTT
>XM_034298369.1
CTCCCACAATGCGCCGGGCTCGGAGAGGTGGGAGGGAGGAATTTCAGCTAACGGGAGGGATGCTGATGGCTGCTCAGTGCCTGCTATCATCACCGAAAACTCACACCTGTAACGCAAACCCGCACGGAGACCACTGAACCATGGACCCTCTGAGCGTCTTCGTGTGGCTGTTAGTAGCTTGTGAAGGCCATAGTCAAATCCAGGCTTTAGTCGACTCTACACAGAAGGCTGTGCCTCATACGGGCGTGGTCACCATCGTCTCTCGCTCGCATGCGGACCGGAACGTCTACCCTTCAGCTGGAGTGCTGTTTGTCCATGTCCTGGAGAGGGAATACTTTAAAGGGGAATTTCCTCCTTATCCAAAGCTAGGGGATACCAGCAATGACCCAATCACCTTTAATACCAACCTGAAGGGTTATCCAGACAGGCCCGGGTGGCTGCGCTACATCCAGCGAACTGCACACAGTGATGGAGTCCTTTACGGCTCCCCCACTGCGGAGCACGCGGGCAAACCAACCATCATCGAGATTACTGCCTATAACAGACGCACTTTCGAAACAGCAAGGCACAATTTGGTCATTAACATCATGGGTACAGAAGAATTCCCCTTGCCGTATCAGGCCGagttttacattaaaaacatgaatgTAGAGGAGATGCTAGCCAGTGAGGTACTGGGAGACTTCCTGGGTGCTGTGAAGAACGTCTGGCAGCCTGAGAGGCTCAATGCCATTAACATCACTTCAGCGCTAGACCGGGGTGGACGTGTGCCCCTGCCTATCAACAACCTGAAAGAGGGCGTGTATGTGATGGTGGGAGCAGACGTGCCGTTCTCATCATGCCTGCGTGAGGTGGAGAGTCCTCAGAACCAGCTGCGCTGCAGTCAGGAGATGGAGCCAGTCATCAGCTGTGACAAGAAGTTCAGAGCTCAATTCCACATCGACTGGTGCAAAATCTCTTTGGTGGATATTACTAAAGTCATCCCTGTGCACAACAGCCGTCCGGAACCGGGCACTGGAGTGCTGCCAGACGTCGGTGACTACAATCCGCCCTCTGAGTCACTGAAAAGTAAAGACTATTTTGCTGACTTCCTGGTCACATTGGCTGTGCCGTCTGCTGTTGCTCTGGTTCTCTTCGTCATCCTGGGTTATTCGATGTGCTGTCGGCGAGAAGGAGTgCGAAAAAGAAACATGCAAACACCAGACATCCAGCTGGTGCACCACAGCTCCATTCAGAAGTCAACAAAGGAGCTGCGCAGCATGTCAAAGAACAGGGAGATCTCCTGGCCTCTCTCCACGCTGCCTGTGTTCAACCCTGTGAGTGGAGAGGTGGTGCCACCAATCCACCCAGAAAACTACGAGACTACCAGCATGCCACTCATGCAGACCCAGACAAATCTTCAAAATCAAATGCAGATACCACAGCAGCAGCCTTCGGGTAAATGGTATTCCTGAAGACAGGAAAGTGGCTGAAGCGCTGAATTTATGAGGAGATCTCTCATCACTCGCAGCTTCCTGTGcctgtgtaatgtgtgtttccACATTGTGCCAAATCTGCATATGCTATAGCTCTGTGATCCTGTGCAGCACCACCGAGATGTAGTCCAAGCAGCAGCTGAGCTAATGATGGCTACGCTCACATGACCATATCTGAACTATTTAAATATCTGAAGGTATTTTGAGGTAATTGTCTTCTTGGGACCATTTAAAGCAACACATTGAAGCTTGAACAGACTTTCATTGAATACGCAACTTtagttttttcttctcttaCTCTACTAAAGATGTTTTGATAGTTAATAAACTTGTCCATGTAAAAATATTCTATCTGTAGTATCATGAGCATGTGTAACAATTTAGAATTGTCATGTGTGCCAGTGGATatgctggggggaaaaaaaacagtccaaaGTATGTTCAGCAAGGTGTTTTATCACTGACAATGATTTAACAACAAACCAGcatttctaaaagaaaatacatcCTTTTCACATTTCAGGacaaaatgattatatttacatCAGCATGGCATgaatcttattattttttttttttacagaggtCCAAACTAAACTATATAATACATTTGAACAAagtcttaaaaaataaaatccacacaTTTATAATTGGATAAATAGCTGTAAGGTGGAGTGAATCCATCAGATTATAGCTGCAGTTTGGCTTAAACGCCACTTCAAGAAATAAAAGGCTTACTTTTACACAAGATCTTGTTTGCTTTTTATCTTGTCTTCCTATAATGGAAGAAAAGGCTAAAATAGCGCAGACTTTGTACATCTGCAAAATACTATGACTATAAAATGAAGCTATGgtacaaaattaaattacaaatgtcTGATAATTGTAGCTAGCATCCAGCTAGTGGCCCTtcgatgaggatgatgaagattgtATTggcacaatataaataaaaatctatctaCGCAAATAAGGACACTATACACCCTTATTCTACAGTTCCCAAATAATGTTACCAAACAGcataaataaatccaaatgGAGAATTAGATCAGATAAACATGGCTGTAATTTAACCAAATAAGCCGATTTACTCTTTCACCAGCAGGATTGCTTAAAACTGCTattgctctaaaaaaaaaaaaaattaacagacTTAGAAAAACTACTTCTCTCCATCTT

Function

symbol description
sgce Predicted to enable calcium ion binding activity. Predicted to be located in several cellular components, including Golgi apparatus; dendrite; and sarcolemma. Predicted to be integral component of membrane. Predicted to be part of sarcoglycan complex. Is expressed in central nervous system; retina; retinal ganglion cell layer; and retinal inner nuclear layer. Human ortholog(s) of this gene implicated in myoclonic dystonia. Orthologous to human SGCE (sarcoglycan epsilon).

NR:

description
PREDICTED: epsilon-sarcoglycan isoform X2

GO:

id name namespace
GO:0016012 sarcoglycan complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU403581 False 1136 lncRNA 0.33 1 9133044 9134179
TU403587 False 1767 lncRNA 0.39 2 9128401 9131271
XM_026929620.2 True 2696 mRNA 0.44 13 9119015 9133558
XM_026929622.2 False 2625 mRNA 0.44 12 9119017 9133558
XM_034298368.1 False 2670 mRNA 0.44 12 9119014 9133558
XM_034298369.1 False 2657 mRNA 0.44 12 9119016 9133558

Neighbor

gene id symbol gene type direction distance location
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding upstream 65684 9034462 ~ 9053330 (+)
dlx5a dlx5,dlx5a,LOC107670186,LOC106570474 coding upstream 244572 8872595 ~ 8874442 (+)
chrac1 chrac1,LOC107591666,LOC107580926,LOC107722130 coding upstream 275896 8839251 ~ 8843118 (+)
c23h6orf62 c24h6orf62,cunh6orf62,zgc:111986,LOC103042486,LOC107555566,LOC107724342,LOC107702127,LOC107743835 coding upstream 294189 8820384 ~ 8824825 (+)
ripor2 fam65b,LOC107555568,LOC102779249 coding upstream 304045 8767996 ~ 8814969 (+)
tfpi2 NA coding downstream 117927 9252106 ~ 9255479 (+)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding downstream 129582 9263761 ~ 9315951 (+)
LOC113536235 NA coding downstream 446736 9580915 ~ 9594532 (+)
efcab1 efcab1 coding downstream 463390 9597569 ~ 9600349 (+)
pex1 pex1 coding downstream 470292 9604471 ~ 9618025 (+)
G340574 asb4 non-coding upstream 60533 9054400 ~ 9058481 (+)
LOC117595810 NA non-coding upstream 152287 8962937 ~ 8966727 (+)
G340517 NA non-coding upstream 201214 8916606 ~ 8917800 (+)
LOC117595890 NA non-coding upstream 227954 8875957 ~ 8891060 (+)
G340339 NA non-coding upstream 259351 8850968 ~ 8859663 (+)
G340600 casd1,LOC107591593,LOC107665666,LOC107731667 non-coding downstream 870 9135049 ~ 9135716 (+)
G340594 casd1 non-coding downstream 3520 9137699 ~ 9139548 (+)
G340597 NA non-coding downstream 6260 9140439 ~ 9141145 (+)
G340596 NA non-coding downstream 13632 9147811 ~ 9148293 (+)
G340592 col1a2,LOC107722140,LOC107667770,LOC107731699,LOC107669816 non-coding downstream 23279 9157458 ~ 9177134 (+)
sem1 NA other upstream 203168 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 833810 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 847515 8240697 ~ 8271499 (+)
G339324 NA other upstream 2401868 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 2502991 6604605 ~ 6616023 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 90425 9224604 ~ 9229638 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 1059568 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 1340304 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 2158112 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 2180351 11314530 ~ 11473323 (+)

Expression


Co-expression Network